View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_high_7 (Length: 547)

Name: NF1734_high_7
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_high_7
NF1734_high_7
[»] chr8 (7 HSPs)
chr8 (1-330)||(10085058-10085387)
chr8 (360-438)||(10085457-10085534)
chr8 (461-511)||(23606855-23606905)
chr8 (461-511)||(42600600-42600650)
chr8 (461-503)||(10917210-10917252)
chr8 (461-511)||(23798495-23798545)
chr8 (360-414)||(10085671-10085727)
[»] chr5 (10 HSPs)
chr5 (445-503)||(7670726-7670785)
chr5 (461-511)||(16199026-16199076)
chr5 (464-511)||(9364113-9364160)
chr5 (461-511)||(27923901-27923951)
chr5 (461-511)||(38869593-38869643)
chr5 (446-503)||(40389773-40389832)
chr5 (461-511)||(16799556-16799606)
chr5 (461-492)||(28822576-28822607)
chr5 (461-497)||(2274814-2274850)
chr5 (461-497)||(36188033-36188069)
[»] chr1 (10 HSPs)
chr1 (447-511)||(9173255-9173321)
chr1 (461-511)||(1367111-1367161)
chr1 (461-511)||(13913716-13913766)
chr1 (461-511)||(40502024-40502074)
chr1 (460-511)||(19955546-19955597)
chr1 (461-511)||(27559463-27559513)
chr1 (461-503)||(44895483-44895525)
chr1 (446-511)||(17168768-17168835)
chr1 (461-497)||(6888485-6888521)
chr1 (461-497)||(16139976-16140012)
[»] chr4 (13 HSPs)
chr4 (447-511)||(38352489-38352554)
chr4 (460-511)||(40089339-40089390)
chr4 (461-511)||(16844843-16844893)
chr4 (461-511)||(24969258-24969308)
chr4 (463-511)||(16882627-16882675)
chr4 (461-503)||(2790982-2791024)
chr4 (461-499)||(32128408-32128446)
chr4 (461-511)||(37777459-37777509)
chr4 (461-511)||(54083478-54083528)
chr4 (464-511)||(34027407-34027454)
chr4 (462-503)||(35463958-35463999)
chr4 (461-497)||(32915313-32915349)
chr4 (461-497)||(48208466-48208502)
[»] chr7 (8 HSPs)
chr7 (446-511)||(47985202-47985269)
chr7 (461-511)||(25010269-25010319)
chr7 (461-511)||(48984077-48984127)
chr7 (461-511)||(20091514-20091564)
chr7 (461-511)||(24525918-24525968)
chr7 (461-501)||(19691913-19691953)
chr7 (461-511)||(23551305-23551355)
chr7 (465-511)||(38415108-38415154)
[»] chr3 (9 HSPs)
chr3 (463-511)||(54407391-54407439)
chr3 (447-511)||(53507117-53507183)
chr3 (461-511)||(34290874-34290924)
chr3 (461-511)||(43207474-43207524)
chr3 (461-511)||(44708298-44708348)
chr3 (463-511)||(50939468-50939516)
chr3 (442-508)||(48156937-48157005)
chr3 (461-511)||(9878919-9878969)
chr3 (462-511)||(48720530-48720579)
[»] chr2 (9 HSPs)
chr2 (446-511)||(26715930-26715997)
chr2 (447-511)||(24410236-24410302)
chr2 (461-511)||(9045848-9045898)
chr2 (461-511)||(27506975-27507025)
chr2 (466-511)||(8327488-8327533)
chr2 (465-511)||(10762799-10762845)
chr2 (461-497)||(34693163-34693199)
chr2 (461-497)||(34715575-34715611)
chr2 (461-497)||(40635978-40636014)
[»] chr6 (5 HSPs)
chr6 (447-511)||(17353759-17353825)
chr6 (447-511)||(20711952-20712018)
chr6 (461-511)||(27788922-27788972)
chr6 (445-511)||(19986964-19987032)
chr6 (461-503)||(235467-235509)
[»] scaffold0039 (1 HSPs)
scaffold0039 (447-511)||(106379-106445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (462-511)||(4166-4215)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 10085058 - 10085387
Alignment:
Q  1 gggatctacataaagaatatgacaaaagtggtaaatgcagtcccaagttgttgattgttgttttttatagtcatattcatatatatcccacctacttacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10085058 gggatctacataaagaatatgacaaaagtggtaaatgcagtcccaagttgttgattgttgttttttatagtcatattcatatatatcccacctacttacg 10085157  T
Q  101 agtgacactatgccaccatcatatttcttcccattcccaatatttagtgcccatacacttgttccccgtggtccaaccctgtgataacctgcacactcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10085158 agtgacactatgccaccatcatatttcttcccattcccaatatttagtgcccatacacttgttccccgtggtccaaccctgtgataacctgcacactcat 10085257  T
Q  201 gacataacttattcttccaccatattgcattttatcattctatgaatcttatacttcaaatatatactctctatattctttattataagactcactctta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10085258 gacataacttattcttccaccatattgcattttatcattctatgaatcttatacttcaaatatatactctctatattctttattataagactcactctta 10085357  T
Q  301 aaatgcaattcacggtaattaaataatctt 330  Q
    || |||||||||||||||||||||||||||    
T  10085358 aattgcaattcacggtaattaaataatctt 10085387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 10085457 - 10085534
Alignment:
Q  360 aacatgataaagattgcataaataaattttaaa--gtgtgtggatacattaaacttttatgtttggtattcgtctccacta 438  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||  ||||| ||||||||    
T  10085457 aacatgataaagattgcataaataaattttaaagtgtgtgtggatacattaaac-tttatgtttg--attcgcctccacta 10085534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 23606905 - 23606855
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23606905 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 23606855  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 42600600 - 42600650
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  42600600 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 42600650  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 10917210 - 10917252
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  10917210 ggggtgcaaacagctcaacagagctgggcctccctcactcatg 10917252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 23798545 - 23798495
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||| |||||||||||| || ||||||||||||||||||| |||||||    
T  23798545 ggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 23798495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 10085671 - 10085727
Alignment:
Q  360 aacatgataaagattgcataaataaattttaaa--gtgtgtggatacattaaacttt 414  Q
    ||||||||||||| |||| |||||||||| |||  ||||||||||||||||||||||    
T  10085671 aacatgataaagagtgcacaaataaatttcaaagtgtgtgtggatacattaaacttt 10085727  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 445 - 503
Target Start/End: Original strand, 7670726 - 7670785
Alignment:
Q  445 aacaggcccggccct-aggggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7670726 aacaggcccggccctgaggggtgcaaacagctcaacagagttgggcctccctcagtcatg 7670785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 16199076 - 16199026
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  16199076 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16199026  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 9364113 - 9364160
Alignment:
Q  464 gtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9364160  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 27923901 - 27923951
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  27923901 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 38869643 - 38869593
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  38869643 ggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 38869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 503
Target Start/End: Complemental strand, 40389832 - 40389773
Alignment:
Q  446 acaggcccggccct-ag-gggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    |||||||||||||| || |||||||||||||||||||||  |||||||||||||||||||    
T  40389832 acaggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatg 40389773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 16799606 - 16799556
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||| |||| | ||||||||||||||||| |||||||    
T  16799606 ggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa 16799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 28822607 - 28822576
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctc 492  Q
    ||||||||||||||||||||||||||||||||    
T  28822607 ggggtgcaaacagctcaacagagttgggcctc 28822576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 2274814 - 2274850
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  2274814 ggggtgcaaacagctcaaatgagttgggcctccctca 2274850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 36188069 - 36188033
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  36188069 ggggtgcaaacagctcaaacgagttgggcctccctca 36188033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 9173321 - 9173255
Alignment:
Q  447 caggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9173321 caggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 9173255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 1367161 - 1367111
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  1367161 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 13913766 - 13913716
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  13913766 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 13913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 40502074 - 40502024
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  40502074 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 511
Target Start/End: Original strand, 19955546 - 19955597
Alignment:
Q  460 aggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  19955546 aggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 19955597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 27559463 - 27559513
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  27559463 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 44895483 - 44895525
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  44895483 ggggtgcaaacagctcaacagagctgggcctccctcagtcatg 44895525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 17168768 - 17168835
Alignment:
Q  446 acaggcccggccct-agggg-tgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||| |||| ||||| |||||||||||||| |||| | ||||||||||||||||| |||||||    
T  17168768 acaggcccgaccctgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa 17168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 6888485 - 6888521
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  6888485 ggggtgcaaacagctcaaacgagttgggcctccctca 6888521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 16139976 - 16140012
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  16139976 ggggtgcaaacagctcaaacgagttgggcctccctca 16140012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 38352554 - 38352489
Alignment:
Q  447 caggcccggccct-aggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 511
Target Start/End: Original strand, 40089339 - 40089390
Alignment:
Q  460 aggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  40089339 aggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40089390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 16844843 - 16844893
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  16844843 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16844893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 24969258 - 24969308
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  24969258 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24969308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 16882675 - 16882627
Alignment:
Q  463 ggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  16882675 ggtgcaaacagctcaacagagctgggcttcccttagtcatgagcctcaa 16882627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 503
Target Start/End: Complemental strand, 2791024 - 2790982
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  2791024 ggggtgcaaacagctcaacagagctgggtctccctcagtcatg 2790982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Original strand, 32128408 - 32128446
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagt 499  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  32128408 ggggtgcaaacagctcaacagagctgggcctccctcagt 32128446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 37777509 - 37777459
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||    
T  37777509 ggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaa 37777459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 54083528 - 54083478
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| |||||||    
T  54083528 ggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaa 54083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 34027407 - 34027454
Alignment:
Q  464 gtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||| ||||||||||| |||| |||||||||||||| |||||||    
T  34027407 gtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaa 34027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 503
Target Start/End: Original strand, 35463958 - 35463999
Alignment:
Q  462 gggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    
T  35463958 gggtgcaaacagctcaacagagctgggcctcccccagccatg 35463999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 32915313 - 32915349
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  32915313 ggggtgcaaacagctcaaacgagttgggcctccctca 32915349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 48208466 - 48208502
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  48208466 ggggtgcaaacagctcaaacgagttgggcctccctca 48208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 47985269 - 47985202
Alignment:
Q  446 acaggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  47985269 acaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 47985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 25010269 - 25010319
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  25010269 ggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 25010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 48984127 - 48984077
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  48984127 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 48984077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 20091564 - 20091514
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  20091564 ggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa 20091514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 24525968 - 24525918
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  24525968 ggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 24525918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 19691913 - 19691953
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtca 501  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  19691913 ggggtgcaaacagctcaacagagctgggcctccctcagtca 19691953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 23551355 - 23551305
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||| |||||||| ||||||||| ||||| |||||||    
T  23551355 ggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaa 23551305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 38415154 - 38415108
Alignment:
Q  465 tgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  38415154 tgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 54407439 - 54407391
Alignment:
Q  463 ggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54407439 ggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 54407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 53507183 - 53507117
Alignment:
Q  447 caggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 53507117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 34290924 - 34290874
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  34290924 ggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaa 34290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 43207524 - 43207474
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  43207524 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 43207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 44708298 - 44708348
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  44708298 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 44708348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 50939516 - 50939468
Alignment:
Q  463 ggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  50939516 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 50939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 508
Target Start/End: Original strand, 48156937 - 48157005
Alignment:
Q  442 atgaacaggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcct 508  Q
    |||| |||||||||||||   ||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  48156937 atgagcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcct 48157005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 9878969 - 9878919
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  9878969 ggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa 9878919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 511
Target Start/End: Complemental strand, 48720579 - 48720530
Alignment:
Q  462 gggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||||| || || ||||||||||||| |||||||    
T  48720579 gggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 26715930 - 26715997
Alignment:
Q  446 acaggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  26715930 acaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 26715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 24410236 - 24410302
Alignment:
Q  447 caggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||| |||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  24410236 caggcccgtccctaagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24410302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 9045848 - 9045898
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  9045848 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 27507025 - 27506975
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  27507025 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 511
Target Start/End: Original strand, 8327488 - 8327533
Alignment:
Q  466 gcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 8327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 10762845 - 10762799
Alignment:
Q  465 tgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  10762845 tgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaa 10762799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 34693163 - 34693199
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  34693163 ggggtgcaaacagctcaaacgagttgggcctccctca 34693199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 34715575 - 34715611
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  34715575 ggggtgcaaacagctcaaacgagttgggcctccctca 34715611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 40635978 - 40636014
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctca 497  Q
    ||||||||||||||||||  |||||||||||||||||    
T  40635978 ggggtgcaaacagctcaaacgagttgggcctccctca 40636014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 17353759 - 17353825
Alignment:
Q  447 caggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  17353759 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 17353825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 20712018 - 20711952
Alignment:
Q  447 caggcccggccct-agg-ggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  20712018 caggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 20711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 27788972 - 27788922
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  27788972 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 19986964 - 19987032
Alignment:
Q  445 aacaggcccggcccta--ggggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| | ||| |||||||    
T  19986964 aacaggcccggccctaagggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaa 19987032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 503
Target Start/End: Complemental strand, 235509 - 235467
Alignment:
Q  461 ggggtgcaaacagctcaacagagttgggcctccctcagtcatg 503  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  235509 ggggtgcaaacagcttaacagagctgggcctccctcagtcatg 235467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 106379 - 106445
Alignment:
Q  447 caggcccggccct-ag-gggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 4166 - 4215
Alignment:
Q  462 gggtgcaaacagctcaacagagttgggcctccctcagtcatgagcctcaa 511  Q
    |||||||||||||||||||||| |||||||||  |||||||| |||||||    
T  4166 gggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa 4215  T

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