View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_high_84 (Length: 207)

Name: NF1734_high_84
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_high_84
NF1734_high_84
[»] scaffold0464 (1 HSPs)
scaffold0464 (10-192)||(7901-8083)
[»] chr3 (2 HSPs)
chr3 (13-192)||(12734841-12735020)
chr3 (10-192)||(32578913-32579095)
[»] chr7 (5 HSPs)
chr7 (10-180)||(19357762-19357932)
chr7 (10-114)||(19779520-19779624)
chr7 (10-114)||(19887759-19887863)
chr7 (10-117)||(19351117-19351224)
chr7 (44-114)||(19721939-19722009)
[»] chr2 (3 HSPs)
chr2 (10-180)||(18913605-18913775)
chr2 (10-186)||(18908857-18909033)
chr2 (10-186)||(18920813-18920989)
[»] chr6 (1 HSPs)
chr6 (10-114)||(14749315-14749419)


Alignment Details
Target: scaffold0464 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 8083 - 7901
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8083 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 7984  T
Q  110 acaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttgattgaaat 192  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7983 acaaaaccgttgggtggcagcaactgcctaaatgtctctgtagccagaacaagtgatacgatcacaaattggttgattgaaat 7901  T

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Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 12734841 - 12735020
Alignment:
Q  13 catcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttcaaca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  12734841 catcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgatccatcaatacagtaacagatggctcaacaggtggtatttcaaca 12734940  T
Q  113 aaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttgattgaaat 192  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12734941 aaaccgttgggtggcaacaactgcctaaatgtctctgtagccagaacaagtgatacgatcacaaattggttgactgaaat 12735020  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 32578913 - 32579095
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||| |||||||||| ||||||||| ||||||||||||    
T  32578913 catcatcatccataaaacaaaatgggtctccttgaaacggtgagaaaaacatagacaatccatcaacacagtaacagctggctcaaccggtggtacttca 32579012  T
Q  110 acaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttgattgaaat 192  Q
    ||||| || |  | ||||||||| || | | ||||||| |||| |||| |||||||||| || | |||||| | |||||||||    
T  32579013 acaaatccctgcgatggcagcaaatgtcggtatgtctccgtagtcagatcaagtgataaaatgagaaattgctcgattgaaat 32579095  T

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Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 19357932 - 19357762
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    ||||||| |||||||||| |||||||| || ||||||  ||||||||||||||||| || |||||||||||| ||| |||||| || |||||||||||||    
T  19357932 catcatcttccataaaacgaaatgggtccctttgaaatagtgagaaaaacatagactatccatcaatacagttacaaatggctgaataggtggtacttca 19357833  T
Q  110 acaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattg 180  Q
    ||||||||| | |||||||||||||||||  ||||||| || |||||| ||||||| | ||||||||||||    
T  19357832 acaaaaccgctaggtggcagcaactgcctatatgtctccgtggccagatcaagtgagacgatcacaaattg 19357762  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 19779624 - 19779520
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    |||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||| |||    
T  19779624 catcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatccatcaatacagtaacagctggatcaacaggtggtacatca 19779525  T
Q  110 acaaa 114  Q
    |||||    
T  19779524 acaaa 19779520  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 19887759 - 19887863
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    |||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||| |||    
T  19887759 catcatcaaccataaaacaaaatgggtctccttggaacggtgagaaaaacatagacaatccatcaatacagtaacagctggatcaacaggtggtacatca 19887858  T
Q  110 acaaa 114  Q
    |||||    
T  19887859 acaaa 19887863  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 19351117 - 19351224
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    |||||||  |||||||||||||||||| |  |||| |  ||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||||    
T  19351117 catcatctgccataaaacaaaatgggtccttttgagattgtgagaaaaacatagacaatccatcaatacagtaacggatggctcagcaggtggtacttca 19351216  T
Q  110 acaaaacc 117  Q
    ||||||||    
T  19351217 acaaaacc 19351224  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 19722009 - 19721939
Alignment:
Q  44 aaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttcaacaaa 114  Q
    |||| |||||||||||||||||  | |||||||||||||||||| |||||||||| |||||||||||||||    
T  19722009 aaactgtgagaaaaacatagacagtccatcaatacagtaacagacggctcaacagttggtacttcaacaaa 19721939  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 18913605 - 18913775
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| || |||||| ||| ||||||| || ||||| |||||| |||||    
T  18913605 catcatcttccatataacaaaatgggttcccctgaaacggtgagaaaaacatagacaatccatcaacacactaacagacggttcaacgggtggtgcttca 18913704  T
Q  110 acaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattg 180  Q
    ||||||||| | ||||||| ||||||   | ||||||||||||||| | |||| || |  |||||||||||    
T  18913705 acaaaaccgctaggtggcaacaactgttggtatgtctctgtagccaaatcaagcgagactatcacaaattg 18913775  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 18908857 - 18909033
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    ||||||| |||||| ||||||||||||| |  | |||||||||||||||||||||| || |||||| ||| ||||||| || ||||||||||||||||||    
T  18908857 catcatcttccatataacaaaatgggtttctctaaaacggtgagaaaaacatagacaatccatcaacacactaacagacggttcaacaggtggtacttca 18908956  T
Q  110 acaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttgat 186  Q
    ||||||||| | ||||||||||| ||||   ||||||||||| ||| | |||| || |  ||||||||||| |||||    
T  18908957 acaaaaccgctaggtggcagcaattgccgatatgtctctgtatccaaatcaagcgagactatcacaaattgtttgat 18909033  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 18920813 - 18920989
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    ||||||| |||||| ||||||||||||| |  | ||||||||||||||||||| || || |||||| ||| ||||||| || ||||||||||||||||||    
T  18920813 catcatcttccatataacaaaatgggtttctctaaaacggtgagaaaaacatatacaatccatcaacacactaacagacggttcaacaggtggtacttca 18920912  T
Q  110 acaaaaccgttgggtggcagcaactgcctgaatgtctctgtagccagaacaagtgataagatcacaaattggttgat 186  Q
    ||||||||| | ||||||||||| ||||   ||||||||||| ||| | |||| || |  ||||||||||| |||||    
T  18920913 acaaaaccgctaggtggcagcaattgccgatatgtctctgtaaccaaatcaagcgagactatcacaaattgtttgat 18920989  T

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Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 14749419 - 14749315
Alignment:
Q  10 catcatcatccataaaacaaaatgggttcccttgaaacggtgagaaaaacatagacgattcatcaatacagtaacagatggctcaacaggtggtacttca 109  Q
    ||||||| |||||||||||||||||||  | ||||||||||||||||||||||||| || |||||| |  ||||||||||||||||||| ||||||||||    
T  14749419 catcatcctccataaaacaaaatgggtctctttgaaacggtgagaaaaacatagacaatccatcaaaatggtaacagatggctcaacagatggtacttca 14749320  T
Q  110 acaaa 114  Q
    |||||    
T  14749319 acaaa 14749315  T

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