View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_19 (Length: 427)

Name: NF1734_low_19
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_19
NF1734_low_19
[»] chr6 (2 HSPs)
chr6 (52-245)||(6861368-6861561)
chr6 (219-412)||(6861148-6861354)
[»] chr4 (2 HSPs)
chr4 (151-194)||(31699477-31699520)
chr4 (151-200)||(37306398-37306447)
[»] chr3 (1 HSPs)
chr3 (151-194)||(50320552-50320595)
[»] chr1 (2 HSPs)
chr1 (151-194)||(24886177-24886220)
chr1 (18-59)||(1395367-1395408)
[»] chr5 (1 HSPs)
chr5 (151-200)||(30892247-30892296)
[»] chr8 (1 HSPs)
chr8 (151-199)||(6580968-6581016)
[»] chr7 (1 HSPs)
chr7 (151-199)||(41873429-41873477)
[»] chr2 (1 HSPs)
chr2 (151-199)||(5139963-5140011)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 6861561 - 6861368
Alignment:
Q  52 atgtttatataggtttacataacgagcctttttaacactctcaaatacctattttttattggatgaaattcatggtgataccacacaaaaataagataat 151  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||  |||| | ||||||||||||    
T  6861561 atgtttatataggtttacataacaagcctttctaacactctcaaatacctattttttattggatgaaattcatgtggatttcacagagaaataagataat 6861462  T
Q  152 gagtattagagagagtgctagaaagaaagtattcttagcatttatcttgtatcctagcattatgtgatgataccttgtctaggtaaaattttca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6861461 gagtattagagagagtgctagaaagaaagtattcttagcatttatcttgtatcctagcattatttgatgataccttgtctaggtaaaattttca 6861368  T

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Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 219 - 412
Target Start/End: Complemental strand, 6861354 - 6861148
Alignment:
Q  219 tgataccttgtctaggtaaaattttcaggttggtgaaatctcttgcgggttttctaacaaaagttttgaagtacttttcttcaataatttcacagtttgg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6861354 tgataccttgtctaggtaaaattttcaggttggtgaaatctcttgcgggttttctaacaaaagtattgaagtacttttcttcaataatttcccagtttgg 6861255  T
Q  319 tcaatttatttggagaaattctagagtccc---------actctct----aacactccaataataatccaattgaaaatatctggattgtaaaggttcct 405  Q
    ||||||||||||||||||| ||||||||||         |||||||     ||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  6861254 tcaatttatttggagaaatgctagagtcccacctctaatactctctttaacacacttcaataataatccaattgagaatatctggatcgtaaaggttcct 6861155  T
Q  406 aattaat 412  Q
    |||||||    
T  6861154 aattaat 6861148  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 31699520 - 31699477
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcattt 194  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||    
T  31699520 tgagtgttagagagagtgctagaaagagagtgttcttagcattt 31699477  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 37306447 - 37306398
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcatttatcttg 200  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||| |||||    
T  37306447 tgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg 37306398  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 50320552 - 50320595
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcattt 194  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  50320552 tgagtgttagagagagtgctagaaagaaagtgttcctagcattt 50320595  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 24886177 - 24886220
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcattt 194  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||    
T  24886177 tgagtgttagagagagtgctagaaagagagtgttcttagcattt 24886220  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 1395367 - 1395408
Alignment:
Q  18 cataaggatttccttatgcaccgcaaccgcaaccatgtttat 59  Q
    ||||||||||||||||||||||  |||||||||||| |||||    
T  1395367 cataaggatttccttatgcaccataaccgcaaccatatttat 1395408  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 30892247 - 30892296
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcatttatcttg 200  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||| |||||    
T  30892247 tgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttg 30892296  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 6580968 - 6581016
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcatttatctt 199  Q
    ||||| ||||||||||||||||||||| ||| |||||| ||||| ||||    
T  6580968 tgagtgttagagagagtgctagaaagagagtgttcttaacatttctctt 6581016  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 41873477 - 41873429
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcatttatctt 199  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||| ||||    
T  41873477 tgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt 41873429  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 5140011 - 5139963
Alignment:
Q  151 tgagtattagagagagtgctagaaagaaagtattcttagcatttatctt 199  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||| ||||    
T  5140011 tgagtgttagagagagtgctagaaagagagtgttcctagcatttctctt 5139963  T

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