View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_2 (Length: 647)
Name: NF1734_low_2
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 170 - 634
Target Start/End: Original strand, 28168412 - 28168886
Alignment:
| Q |
170 |
actatcccaatctggaacataagctggcctggtatatccttttaacttagtaagcatcattgatttcaagtcttcatgaccaccaatcaacattattttg |
269 |
Q |
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| T |
28168412 |
actatcccgatctggaacataagctgg-----tatatccttttaacttagtaagcatcgttgatttcaagtcttcatgaccaccaatcaacattattttg |
28168506 |
T |
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| Q |
270 |
cacaaggaaagaaagtaattcagaatggacgacatggaggatttaagctgcataagacgaccttccatatacaagttattacatttttaac--------- |
360 |
Q |
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| T |
28168507 |
cacaaggaaagaaagtaattcggaatggacgacatggaggatttaagctacataagacgaccttccatatacaagttattacatttctaacattcgaatt |
28168606 |
T |
|
| Q |
361 |
------aaggatgtctttacatggtgtattcaactttcgtttcctagcttcttcaaacttcttaaattcatccatcatgtctcctatcttgtcgacaacc |
454 |
Q |
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| T |
28168607 |
tctaacaaggatgtccttacatggtgtattcaactttcttttcctagcttcttcaaacttcttaaattcatccatcatgtctcctatcttgtcgacaacc |
28168706 |
T |
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| Q |
455 |
actcttatcttctcgtgtatatcctcatctcagtagaagccatacacttatgaagagttgttttattctctttctttattaattctttcaatatcgtttg |
554 |
Q |
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| T |
28168707 |
actcttatcttctcgtgtatatcctcatctcagtagaagccatacatttatgaagagttgttttattctctttctttattaactctttcaatatcgtttg |
28168806 |
T |
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| Q |
555 |
atgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatctttccaatttcatcaacgtttcatgcacct |
634 |
Q |
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| T |
28168807 |
atgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatcttttcaatttcatcaacgtttcatgcacct |
28168886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 201 - 355
Target Start/End: Original strand, 28173151 - 28173305
Alignment:
| Q |
201 |
gtatatccttttaacttagtaagcatcattgatttcaagtcttcatgaccaccaatcaacattattttgcacaaggaaagaaagtaattcagaatggacg |
300 |
Q |
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||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||| ||||||||||| || || |||||||||||||| |||||||| |
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| T |
28173151 |
gtatatctttttaactgagcaagcatcgttgatttcaagtcttcacgaccaccaacgaacattattttacaaaaagaaagaaagtaatttggaatggaca |
28173250 |
T |
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| Q |
301 |
acatggaggatttaagctgcataagacgaccttccatatacaagttattacattt |
355 |
Q |
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| T |
28173251 |
acatggatgatttaagctacataaggcgaccttccatatacaagttattacattt |
28173305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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