View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_20 (Length: 420)

Name: NF1734_low_20
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_20
NF1734_low_20
[»] chr6 (4 HSPs)
chr6 (7-404)||(887915-888312)
chr6 (142-301)||(1002916-1003069)
chr6 (321-369)||(32847516-32847564)
chr6 (309-355)||(4433089-4433135)
[»] scaffold0117 (1 HSPs)
scaffold0117 (7-124)||(16497-16616)
[»] chr4 (3 HSPs)
chr4 (7-115)||(48301284-48301392)
chr4 (309-363)||(5912673-5912727)
chr4 (333-363)||(10411764-10411794)
[»] chr1 (1 HSPs)
chr1 (7-88)||(38192368-38192449)
[»] chr8 (3 HSPs)
chr8 (309-363)||(30051677-30051731)
chr8 (321-370)||(11443398-11443447)
chr8 (321-369)||(25016718-25016766)
[»] chr3 (1 HSPs)
chr3 (319-361)||(52750236-52750278)
[»] chr5 (1 HSPs)
chr5 (324-364)||(29161162-29161202)
[»] chr2 (1 HSPs)
chr2 (7-51)||(20019954-20019998)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Complemental strand, 888312 - 887915
Alignment:
Q  7 gtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcacagagaaaattag 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888312 gtagcatgggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcacagagaaaattag 888213  T
Q  107 ttaagatagtcgtaacataaatttggagtatcttctcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatcaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888212 ttaagatagtcgtaacataaatttggagtatcttctcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatcaaa 888113  T
Q  207 tggttatgttattttggatacgagtctcattttgaatcttgattccttttgatgattcatttccaagatttagtgaagttagtcacttttctttatttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888112 tggttatgttattttggatacgagtctcattttgaatcttgattccttttgatgattcatttccaagatttagtgaagttagtcacttttctttatttag 888013  T
Q  307 taatttgattaataacttgaatctttaattattttgaggttcacatatgatatatcagtttatgattgttatattacttttgtctgtactgtttaaat 404  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  888012 taatttgatttataacttgaatctttaattattttgaggttcacatatgatatatcagtttatgattgttatattacctttgtctgtactgtttaaat 887915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 301
Target Start/End: Original strand, 1002916 - 1003069
Alignment:
Q  142 tcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatcaaatggttatgttattttggatacgagtctcattttga 241  Q
    |||| ||||||| | ||| || ||||||||||||| ||||||||||  ||||||| ||||| |||||||| ||||||    |||| || | |||||||||    
T  1002916 tcacgatatatgtgagtcgtaacttgattcgatattcaaaatcgat--acacattttaaatgaaatggttttgttat----gatatgaatatcattttga 1003009  T
Q  242 atcttgattccttttgatgattcatttccaagatttagtgaagttagtcacttttcttta 301  Q
    ||||||||||||||| |||| |||||||| | |||||||| |||||||| ||||||||||    
T  1003010 atcttgattccttttaatgaatcatttcctaaatttagtgtagttagtcgcttttcttta 1003069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 32847564 - 32847516
Alignment:
Q  321 acttgaatctttaattattttgaggttcacatatgatatatcagtttat 369  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||| ||||    
T  32847564 acttgaatcttgaattattttgaggctcatatatgatatatcagcttat 32847516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 4433135 - 4433089
Alignment:
Q  309 atttgattaataacttgaatctttaattattttgaggttcacatatg 355  Q
    |||||||| || ||||||||||| ||||||||||||||||| |||||    
T  4433135 atttgatttatgacttgaatcttgaattattttgaggttcatatatg 4433089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 16497 - 16616
Alignment:
Q  7 gtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcac--agagaaaatt 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||||||||||||||||  ||||||| ||    
T  16497 gtagcataggattgtttggaatttgctgttagaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagtt 16596  T
Q  105 agttaagatagtcgtaacat 124  Q
    | ||||||||||| ||||||    
T  16597 acttaagatagtcataacat 16616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 48301284 - 48301392
Alignment:
Q  7 gtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcacagagaaaattag 106  Q
    ||||||||||||||| | || |||| || ||||||||||||| || | ||| |||||| |||||||||| |||||||||||| ||| |||||||||||||    
T  48301284 gtagcataggattgtatggagtttgttgctagaaagaaaaataaaaataaaatagagcatattagctatgactataagcagactgcgcagagaaaattag 48301383  T
Q  107 ttaagatag 115  Q
    |||||||||    
T  48301384 ttaagatag 48301392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 5912673 - 5912727
Alignment:
Q  309 atttgattaataacttgaatctttaattattttgaggttcacatatgatatatca 363  Q
    |||||||  |||| ||||||||| ||||||||||||||||| |||| ||||||||    
T  5912673 atttgatatataatttgaatcttgaattattttgaggttcatatataatatatca 5912727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 363
Target Start/End: Original strand, 10411764 - 10411794
Alignment:
Q  333 aattattttgaggttcacatatgatatatca 363  Q
    |||||||||||||||||||||||||||||||    
T  10411764 aattattttgaggttcacatatgatatatca 10411794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 38192368 - 38192449
Alignment:
Q  7 gtagcataggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcaga 88  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||| || ||| |||||  ||| |||||||||||||| ||||    
T  38192368 gtagcataggattatttggaattttctgttagaaagaaaaatcagcataaaatagagtctatcagctataactataatcaga 38192449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 30051677 - 30051731
Alignment:
Q  309 atttgattaataacttgaatctttaattattttgaggttcacatatgatatatca 363  Q
    |||||||  |||||||||||||| |||||||||||| |||| |||||||||||||    
T  30051677 atttgatatataacttgaatcttgaattattttgagattcatatatgatatatca 30051731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 11443398 - 11443447
Alignment:
Q  321 acttgaatctttaattattttgaggttcacatatgatatatcagtttatg 370  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  11443398 acttgaatcttgaattattttgaagttcatatatgatatatcagcttatg 11443447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 25016718 - 25016766
Alignment:
Q  321 acttgaatctttaattattttgaggttcacatatgatatatcagtttat 369  Q
    |||||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  25016718 acttgaatgtttaattattgtgaggtttacatatgatatatcagcttat 25016766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 52750236 - 52750278
Alignment:
Q  319 taacttgaatctttaattattttgaggttcacatatgatatat 361  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||    
T  52750236 taacttgaatcttgaattagtttgaggttcatatatgatatat 52750278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 29161162 - 29161202
Alignment:
Q  324 tgaatctttaattattttgaggttcacatatgatatatcag 364  Q
    |||| ||| ||||||||||||||||| ||||||||||||||    
T  29161162 tgaaccttgaattattttgaggttcatatatgatatatcag 29161202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 20019954 - 20019998
Alignment:
Q  7 gtagcataggattgttttgaatttgctgttagaaagaaaaatcaa 51  Q
    |||||||||| |||||| || |||||||||||| |||||||||||    
T  20019954 gtagcatagggttgtttggagtttgctgttagagagaaaaatcaa 20019998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University