View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_21 (Length: 414)
Name: NF1734_low_21
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 44104394 - 44104791
Alignment:
| Q |
10 |
aagaatatagggctgatgtaaaataacaaaaataggggtaaaaagaaagcttgttttatcctatatattccaaattggaggaaaaagaacaatggggaaa |
109 |
Q |
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| T |
44104394 |
aagaatatagggctgatgtaaaataacaaaaatagcggtaaaaagaaagcttgttttatcctatatattccaaattggaggaaaaagaacaatgg----- |
44104488 |
T |
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| Q |
110 |
gacaatggaatgagatgaaatggatttcatcatatatcactctattccactaatttttca------------------ccacattccataccactccatt |
191 |
Q |
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| T |
44104489 |
--------aatgagatgaaatggatttcatcatatatcactctattccactaatttttcaaaaatttgaacaacggaaccacattccataccactccatt |
44104580 |
T |
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| Q |
192 |
ccatcatat----ttcatcaatacaaacaaagtcttaagagagttccaatgatcataattcaaatctcagtgaatnnnnnnn-tactaacatgtcaataa |
286 |
Q |
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| T |
44104581 |
ccatcatatatatttcatcaatacaaacaaagtcttaagagagttccaatgatcataattcaaatctcagtgaataaaaaatatactaacatgtcaataa |
44104680 |
T |
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| Q |
287 |
atattctaaagaattgtataaaaataatagtgataatagaaataaggaaaaagcaatccaaatttgtgtatgggctggaccagttatgttatctcagttt |
386 |
Q |
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| T |
44104681 |
atattctaaagaattgtataaaaataatagtgataatagaaataaggaaaaagcaatccaaatttgtgtatgggctggaccagttatgttatctcagttt |
44104780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 5092252 - 5092296
Alignment:
| Q |
123 |
gatgaaatggatttcatcatatatcactctattccactaattttt |
167 |
Q |
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| T |
5092252 |
gatggaatggatttcatcatataccactccattccactcattttt |
5092296 |
T |
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