View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_22 (Length: 400)
Name: NF1734_low_22
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 26572165 - 26572357
Alignment:
| Q |
1 |
aatataacatctaaatttcttttcaagaagaaaaagagagacattatgagaacaaggttgtttggttaaggaaataaatgacatgtgaatattgaaaatg |
100 |
Q |
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| T |
26572165 |
aatataacatctaaatttcttttcaagaagaaaaagagagacattatgagaacaaggttgtttggttaaggaaagaaatgacatgtgaatattgaaaatg |
26572264 |
T |
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| Q |
101 |
agctggttgttgattggaacacagcctatgatcnnnnnnncatttgagattcatatcatgtatgagaggaaattgtggaacaagagttagaag |
193 |
Q |
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| T |
26572265 |
agctggttgttgattggaacacaacctatgatcaaaaaaacatttgagattcatatcatgtatgagaggaaattgtggaacaagagttagaag |
26572357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 26572434 - 26572551
Alignment:
| Q |
270 |
taatgtgattttattaagtacagtgatgagnnnnnnnngagagagaggaaatggtcacaggtatgaaaaaagaatggataggagtaatattctcaaatgg |
369 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26572434 |
taatgtgattttattaagtacagtgatgagttttttttgagagagaggaaatggtcacaggtatgaaaaaagaatggataggagtaatattctcaaatgg |
26572533 |
T |
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| Q |
370 |
aaaatggggttttaactg |
387 |
Q |
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| T |
26572534 |
aaaatggggttttaactg |
26572551 |
T |
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