View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1734_low_23 (Length: 397)
Name: NF1734_low_23
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 14175628 - 14175998
Alignment:
| Q |
11 |
caaaggatgtgatgcactctattggtcacactgacagcatctagtttatcattttgttgaactaaatttagaatttttctcacctgtattgattcccaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
14175628 |
caaaggatgtgatgcactctattggtcacattgacagcatctagtttatcattttgttgaactaaatttataattttcctcacctgtattgattcccaat |
14175727 |
T |
|
| Q |
111 |
tttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataacttcaccttttctccaccttcaacttgaagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14175728 |
tttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataacttcaccttttcttcaccttcaacttgaagg |
14175827 |
T |
|
| Q |
211 |
taataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctcttttttctggtggcaactcaaaaagactagaaattgctttcatca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14175828 |
taataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctctttcttctggtggcaactcaaaaagacttgaaattgctttcatca |
14175927 |
T |
|
| Q |
311 |
ttttagtgcaaacttggtctggaacaccatggttcacaatttggaagaaaccaaattcctcacaagccttt |
381 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175928 |
ttttagtgcaaactttgttagggacaccatggttcacaatttggaagaaaccaaattcctcacaagccttt |
14175998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 83 - 381
Target Start/End: Original strand, 14172249 - 14172547
Alignment:
| Q |
83 |
atttttctcacctgtattgattcccaattttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataactt |
182 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
14172249 |
attttgctcacctgtattgagtcccaattttttctggtaaaagctgaatgatatcatcaataggataccatggatgagcaaaacattcactccacaactt |
14172348 |
T |
|
| Q |
183 |
caccttttctccaccttcaacttgaaggtaataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctcttttttctggtggcaac |
282 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| |||| |
|
|
| T |
14172349 |
aaccttttctccaccatccacttgaaggtaataattgaacaaccttacattcttggtattatctgttgatgaaagatgttctctttcctctggtgccaac |
14172448 |
T |
|
| Q |
283 |
tcaaaaagactagaaattgctttcatcattttagtgcaaacttggtctggaacaccatggttcacaatttggaagaaaccaaattcctcacaagccttt |
381 |
Q |
| |
|
||||| | | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14172449 |
tcaaagaagttggtaattgctttcatcattttagtgcaaacttggtcaggaacaccatggttcacaatttggaagaaaccaaattcttcacaagccttt |
14172547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 83 - 381
Target Start/End: Original strand, 14179709 - 14180007
Alignment:
| Q |
83 |
atttttctcacctgtattgattcccaattttttctggtaaaagctgaatgatatcatcaataggataccattgatgagcaaaacattcactccataactt |
182 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||| |||||||||||| ||||| ||||| ||||||||| ||||| |
|
|
| T |
14179709 |
atttttctcacctgtattgggtcccaatattttctggtagaagagaaatgatatcatccataggataccatggatgaacaaaattttcactccacaactt |
14179808 |
T |
|
| Q |
183 |
caccttttctccaccttcaacttgaaggtaataattgatcaaccttacattcttggtaggatctgttgaggacagatgttctcttttttctggtggcaac |
282 |
Q |
| |
|
|||| |||||||||| || ||| |||| ||||||||| ||| ||||||||||||||| |||||||||| || ||||||| ||||| ||||||| |||| |
|
|
| T |
14179809 |
caccgtttctccaccatctactcgaagtaaataattgaccaatcttacattcttggtatgatctgttgatgaaagatgttttctttcctctggtgccaac |
14179908 |
T |
|
| Q |
283 |
tcaaaaagactagaaattgctttcatcattttagtgcaaacttggtctggaacaccatggttcacaatttggaagaaaccaaattcctcacaagccttt |
381 |
Q |
| |
|
||||| | | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14179909 |
tcaaagaagtttgtaattgctttcatcattttagtgcaaacttggtcaggaacaccatggttcacaatttggaagaaaccaaattcctcacatgccttt |
14180007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 368
Target Start/End: Complemental strand, 14209632 - 14209597
Alignment:
| Q |
333 |
aacaccatggttcacaatttggaagaaaccaaattc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14209632 |
aacaccatggttcacaatttggaagaaaccatattc |
14209597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 368
Target Start/End: Complemental strand, 14217407 - 14217372
Alignment:
| Q |
333 |
aacaccatggttcacaatttggaagaaaccaaattc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14217407 |
aacaccatggttcacaatttggaagaaaccatattc |
14217372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 14223532 - 14223500
Alignment:
| Q |
336 |
accatggttcacaatttggaagaaaccaaattc |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
14223532 |
accatggttcacaatttggaagaaaccatattc |
14223500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 6314991 - 6315040
Alignment:
| Q |
331 |
ggaacaccatggttcacaatttggaagaaaccaaattcctcacaagcctt |
380 |
Q |
| |
|
||||||||||||||||| | || |||||| |||||||||| ||||||||| |
|
|
| T |
6314991 |
ggaacaccatggttcaccactttgaagaatccaaattccttacaagcctt |
6315040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University