View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_24 (Length: 381)

Name: NF1734_low_24
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_24
NF1734_low_24
[»] chr1 (2 HSPs)
chr1 (84-338)||(25084541-25084800)
chr1 (20-86)||(11549252-11549318)
[»] scaffold0022 (1 HSPs)
scaffold0022 (155-346)||(148400-148593)
[»] chr3 (2 HSPs)
chr3 (219-346)||(13477083-13477211)
chr3 (224-319)||(51469183-51469278)
[»] chr8 (2 HSPs)
chr8 (220-342)||(3043272-3043395)
chr8 (224-317)||(14753952-14754045)
[»] chr4 (3 HSPs)
chr4 (219-340)||(12919617-12919739)
chr4 (15-87)||(35191479-35191551)
chr4 (88-160)||(35191668-35191740)
[»] chr5 (1 HSPs)
chr5 (220-346)||(33470406-33470533)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 84 - 338
Target Start/End: Complemental strand, 25084800 - 25084541
Alignment:
Q  84 attcatgttttattgctatagaaaacaacgtattcagtttatattttattgccatgattgtgtttatattgaatccgtttgtatgctatgatcaattggt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  25084800 attcatgttttattgctatagaaaacaacgtattcagtttatattttatttctatgattgtgtttatattaaatccgtttgtatgctatgatcaattggt 25084701  T
Q  184 atttggttgtgttgaagtacatagatg-cagacacagggag---gaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatca 279  Q
    ||||| |||||| |||| ||| ||||| |||||  ||||||   ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  25084700 atttgattgtgtggaagaacaaagatgccagacctagggaggaagaagaagatgagagtgtgatatgtttttctttgaagagtccacaccttaacaatca 25084601  T
Q  280 agtgaataaatgtgaccaattaagattaaaacaaagaat-gttagaatttggagtcaacg 338  Q
    ||| ||||||||||  | |||||||| |||||||||||| ||||| |||||| |||||||    
T  25084600 agtaaataaatgtgggccattaagatcaaaacaaagaatggttaggatttggtgtcaacg 25084541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 11549252 - 11549318
Alignment:
Q  20 attgggatcaaattaaggaattggatttgagtaggcaagaaagacaataaaattatggtagcagatt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| | |||||||    
T  11549252 attgggatcaaattaaggaattggatttgagtaggcaagaaagacgatcaaactatgattgcagatt 11549318  T

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Target: scaffold0022 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 155 - 346
Target Start/End: Complemental strand, 148593 - 148400
Alignment:
Q  155 aatccgtttgtatgctatgatcaattggtatttggttgtgttgaagtacatagatgc-agacacagggaggaagaagatgagagtgtgatatgtttttct 253  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| | | |||| | ||||  ||||||||||||||||||||||||||||||||||||    
T  148593 aatccctttgtatgctatgatcaattggtatttggttgtgtggaagaagaaagattccagacctagggaggaagaagatgagagtgtgatatgtttttct 148494  T
Q  254 ttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaat-gttagaatttggagtcaacgaattcgtt 346  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| | |||||||| |||||||||||| ||||| |||| |||||||||||||||||    
T  148493 ttgaagagtccccacctgaacaatcaagtgaataaatgtgagccattaagatcaaaacaaagaatggttaggatttagagtcaacgaattcgtt 148400  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 13477211 - 13477083
Alignment:
Q  219 gggaggaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaat 318  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| || | |||||||| |||| |||||||    
T  13477211 gggaggaagacgatgagagtgtgatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaat 13477112  T
Q  319 -gttagaatttggagtcaacgaattcgtt 346  Q
     ||||| |||||| ||||| |||||||||    
T  13477111 ggttaggatttggtgtcaatgaattcgtt 13477083  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 51469183 - 51469278
Alignment:
Q  224 gaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaatg 319  Q
    |||||||||||||| ||  ||| |||||||||||||||||||| | | |||||    | |||||||||||| | ||||||||||||||||||||||    
T  51469183 gaagaagatgagagggtagtatatttttctttgaagagttcccacgtgaacaagttcgcgaataaatgtgagccattaagattaaaacaaagaatg 51469278  T

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Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 3043395 - 3043272
Alignment:
Q  220 ggaggaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaat- 318  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| || | |||||||| |||| |||||||     
T  3043395 ggaggaagatgatgagagtgtgatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatg 3043296  T
Q  319 gttagaatttggagtcaacgaatt 342  Q
    ||||| |||||| ||||| |||||    
T  3043295 gttaggatttggtgtcaatgaatt 3043272  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 14753952 - 14754045
Alignment:
Q  224 gaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaa 317  Q
    |||||||||||||| |   |||||||||||||||||||| ||| | | |||||    |||||||||||||| | ||||||||||||||||||||    
T  14753952 gaagaagatgagagggcagtatgtttttctttgaagagtccccacgtgaacaaattcgtgaataaatgtgagccattaagattaaaacaaagaa 14754045  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 12919739 - 12919617
Alignment:
Q  219 gggaggaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||| || ||||||||||||| | |||||||| |||||||| |||    
T  12919739 gggaggaagaagatgagagtgtgatatgtttttctttgaagagtccccacgttaataattaattgaataaatgtgaaccattaagatcaaaacaaataat 12919640  T
Q  319 g-ttagaatttggagtcaacgaa 340  Q
    | |||| |||||| || ||||||    
T  12919639 gattaggatttggtgttaacgaa 12919617  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 35191479 - 35191551
Alignment:
Q  15 atgagattgggatcaaattaaggaattggatttgagtaggcaagaaagacaataaaattatggtagcagattc 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  35191479 atgagattgggatcaaattaaggaattggatttgagtaggcaagaaagacaatgaacctatggtagcagattc 35191551  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 35191668 - 35191740
Alignment:
Q  88 atgttttattgctatagaaaacaacgtattcagtttatattttattgccatgattgtgtttatattgaatccg 160  Q
    ||||||| ||||||||||||| ||||| |||| ||||||||||||||  ||||||  ||||||||||||||||    
T  35191668 atgtttttttgctatagaaaagaacgtgttcaatttatattttattgttatgattcagtttatattgaatccg 35191740  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 33470533 - 33470406
Alignment:
Q  220 ggaggaagaagatgagagtgtgatatgtttttctttgaagagttcccgccttaacaatcaagtgaataaatgtgaccaattaagattaaaacaaagaat- 318  Q
    ||||||||||||||||||||| |||||||||||||| ||||||  ||   |||||||| ||||||||||||| || | |||||||| |||| |||||||     
T  33470533 ggaggaagaagatgagagtgtaatatgtttttctttaaagagtctccatgttaacaattaagtgaataaatgggagccattaagatcaaaataaagaatg 33470434  T
Q  319 gttagaatttggagtcaacgaattcgtt 346  Q
    ||| | |||||| |||||| ||||||||    
T  33470433 gtttggatttggtgtcaacaaattcgtt 33470406  T

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