View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_25 (Length: 377)
Name: NF1734_low_25
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 34005248 - 34004898
Alignment:
| Q |
10 |
catcatcacatcactcaaaggcgtgtatttcatttcacattaactcatggaatattcatcgaaattttgtatgtgaaattatttcctttccact-----t |
104 |
Q |
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| T |
34005248 |
catcatcacatcactcaaaggcgtgtatttcatttcacattaactcatggaatattcaccgaaattttgtatgtgaaattatttcctttccactccactt |
34005149 |
T |
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| Q |
105 |
gattcagttaaatgcgcagtactagtgaggaatacttgttttgacctcataataccaacatgaccccatttgaccttttcctcataagaatttaattttt |
204 |
Q |
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| T |
34005148 |
gattcagttaaatgcgcagtactagtgaggaatacttgttttgacctcataataccaacatgaccccatttgaccttttcctcataagaatttaattttt |
34005049 |
T |
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| Q |
205 |
tatgatttattactaccaagttaccaacccattctctctaattgcgaattttgatcattttttaattaaaccactcggtagatataaaatatagactaag |
304 |
Q |
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| T |
34005048 |
-atgatttattactaccaagt-accaacccattctctctaattgcgaattttgatcattttttaattaaaccactcggtagatataaaatatagactaag |
34004951 |
T |
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| Q |
305 |
atatttgatcatttatcttatattaatgttaaggatattttctttttaacact |
357 |
Q |
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| T |
34004950 |
atatttgatcatttatcttggatgaatgttaaggatattctctttttaacact |
34004898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 34009354 - 34009306
Alignment:
| Q |
148 |
acctcataataccaacatgaccccatttgaccttttcctcataagaatt |
196 |
Q |
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||||||||||| ||||| | |||||||||||||||||| ||||| |||| |
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| T |
34009354 |
acctcataatagcaacacggccccatttgaccttttccacataataatt |
34009306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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