View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1734_low_27 (Length: 370)
Name: NF1734_low_27
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 39784048 - 39783714
Alignment:
| Q |
19 |
attctgcaaccccagtgagtttttaatagctgatcaatacaatcaggaaattttaaaattaactctattttgtttgtaacacctatcacattgcccaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39784048 |
attctgcaaccccagtgagtttttaatagctgatcaatacaatcaggaaattttaaaattaactctattttgtttgtaacacccatcacattgcccaaca |
39783949 |
T |
|
| Q |
119 |
gggatatggagacaaatgcagtacagatattaagatataaaatgaataatcaacccaataacacagcagacaaaatttaaaatttcaccgagagttattt |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39783948 |
gggatatagagacaaatgcagtacagatattaagatataaaatgaataatcaacccaataacacagcagacaaaatttaaaatttcaccgggagttattt |
39783849 |
T |
|
| Q |
219 |
tattggaagattaaaggcagtacataatggtaccaaaggaaattccagtcattgtctacagctggaaatacataaaatgaataatcattttttgatataa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783848 |
tattggaagattaaaggcagtacataatggtaccaaaggaaattccagtcattgtctacagctggaaatacataaaatgaataatcattttttgatataa |
39783749 |
T |
|
| Q |
319 |
gaaaatatctatattgggtgaacaattcaagatgt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783748 |
gaaaatatctatattgggtgaacaattcaagatgt |
39783714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University