View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_29 (Length: 362)

Name: NF1734_low_29
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_29
NF1734_low_29
[»] chr7 (5 HSPs)
chr7 (151-220)||(31069460-31069529)
chr7 (19-84)||(31069596-31069661)
chr7 (283-342)||(31069338-31069397)
chr7 (20-84)||(37614334-37614398)
chr7 (20-80)||(42440446-42440506)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 31069529 - 31069460
Alignment:
Q  151 agagacacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31069529 agagacacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat 31069460  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 31069661 - 31069596
Alignment:
Q  19 attcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaacttcat 84  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31069661 attcttgagttctaccgtcatttctcttcccgcaaaatctttcaagtagcagaagaacaacttcat 31069596  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 31069397 - 31069338
Alignment:
Q  283 ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttg 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31069397 ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttg 31069338  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 37614398 - 37614334
Alignment:
Q  20 ttcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaacttcat 84  Q
    ||||||||||| ||||||| |||||||||||| |||||||| |||||  ||||||||| ||||||    
T  37614398 ttcttgagttcaaccgtcacttctcttcccaccaaatctttgaagtacgagaagaacagcttcat 37614334  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 42440506 - 42440446
Alignment:
Q  20 ttcttgagttctaccgtcatttctcttcccacaaaatctttcaagtagcagaagaacaact 80  Q
    ||||||||||||||||| | |||||||||||| |||||||| |||||  ||||||||||||    
T  42440506 ttcttgagttctaccgtaacttctcttcccaccaaatctttgaagtatgagaagaacaact 42440446  T

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