View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1734_low_31 (Length: 357)
Name: NF1734_low_31
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 62 - 341
Target Start/End: Original strand, 34550960 - 34551249
Alignment:
| Q |
62 |
tccatcagaattgtatttaagccacggattagggggagaaatcatattaacctaaatgatatcttgagtgaatggagaatgacaagccaccttgaatcat |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34550960 |
tccatcagaattgtatttaagccacggattagggggagaaatcatattaacctaaatgatatcttgagtgaatggagaatgacaagccaccttgaaacat |
34551059 |
T |
|
| Q |
162 |
tttaaaattttaaatcatgtactgaagatttcatagtacatttggagtttaaagctgacatactaatggaactattaagtaagttttgca---------- |
251 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34551060 |
tttaaaattttaaatcatgtacagaagatttcatagtacatttggagtttaaagctgacatactaatggaactattaagtaagttttgcaattaaacacg |
34551159 |
T |
|
| Q |
252 |
attaaacactgatttatcaaatctaaaattattcctacatcctcaaataattgagactataagtagactataagcacaaagttaagttac |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34551160 |
attaaacactgatttatcaaatctaaaattattcctacatcctcaaataagtgagactataagtagactataagcacaaagttaagttac |
34551249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34550918 - 34550960
Alignment:
| Q |
1 |
cacctctgcaatctctaaaaatcctctcacatgaagacaattt |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34550918 |
cacctctgcaatctctaaaaatcctctcacatgaagacaattt |
34550960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University