View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1734_low_33 (Length: 344)
Name: NF1734_low_33
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 38300292 - 38299978
Alignment:
| Q |
11 |
taatactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatgggttgac |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
38300292 |
taatactcaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatagatggcttaac |
38300193 |
T |
|
| Q |
111 |
aatatacctaactatacataaaaaggattattcttgagtcagcttctctacttgattggattattccaatactagtttttcaataaaataagtatttgca |
210 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38300192 |
aatatacc-aactatacagaaaaaggattattcttgagtcagcttctctacttgattggattattccaatactagtttttcaataaaataagtatttgca |
38300094 |
T |
|
| Q |
211 |
ggaatcttgcagtttatgctagggtttattttcattatgtttgaaaattttgtagcgattctgcagctatcagattcattatatagtaagattgattaag |
310 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38300093 |
ggaatcttgcag-ttatgctagggtttattttcattatgtttgaaaattttgtagcgattctgcagctatcagattcattatatagtaagattgattaaa |
38299995 |
T |
|
| Q |
311 |
ttgatttatccgaaatg |
327 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38299994 |
ttgatttatccgaaatg |
38299978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 38304501 - 38304395
Alignment:
| Q |
12 |
aatactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatgggttgaca |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
38304501 |
aatactaaagggcgtgtaccttgggagaagaagccgaatgaaataaacataaatgattattctttatcatctttcataaatgaagatggatggcttaaca |
38304402 |
T |
|
| Q |
112 |
atatacc |
118 |
Q |
| |
|
||||||| |
|
|
| T |
38304401 |
atatacc |
38304395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 38292710 - 38292588
Alignment:
| Q |
11 |
taatactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatgggttgac |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
38292710 |
taatactcaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatagatggctttcc |
38292611 |
T |
|
| Q |
111 |
aatatacctaactatacataaaaa |
134 |
Q |
| |
|
|| ||||| | ||||||||||||| |
|
|
| T |
38292610 |
aacatacc-acctatacataaaaa |
38292588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 322
Target Start/End: Complemental strand, 38292542 - 38292412
Alignment:
| Q |
192 |
aataaaataagtatttgcaggaatcttgcagtttatgctagggtttattttc-attatgtttgaaaattttgtagcgattctgcagctatcagattcatt |
290 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
38292542 |
aataaaataagtgtatgtaggaatcttgcagtt-atgctagggtttatttttgattatgtttcaaacttttgtagcaattctgcacctatcagattcatt |
38292444 |
T |
|
| Q |
291 |
atatagtaagattgattaagttgatttatccg |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
38292443 |
atatactaagattgattaagttgatttatccg |
38292412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 18745508 - 18745561
Alignment:
| Q |
51 |
gaaataaatataaatgattattctttatcatctttcataaatgaagatggatgg |
104 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18745508 |
gaaataaatatacaagaatattctttatcatctttcataaataaagatggatgg |
18745561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University