View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_34 (Length: 343)
Name: NF1734_low_34
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 2832670 - 2832358
Alignment:
| Q |
19 |
aacaccttttttctgaagaagcctattcattcagccctaaaacaatacaattaattaacgaaatataaatataaccagaacgctacaacatagaatcaga |
118 |
Q |
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| T |
2832670 |
aacaacttttttctgaagaagcctattcattcagccctaaaacaattcaattaattaacgaaatataaatataaccagaacgctacaacatagaatcaga |
2832571 |
T |
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| Q |
119 |
gtttggcaaaggttgtttgaagaaactggagatttttcatgttatagacnnnnnnnnnnnnnnnnnntattatgtgaaaagtaacaattatattaaccac |
218 |
Q |
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| T |
2832570 |
gtttggcaaaggttgtttgaagaaagtggagatttttcatgttatagacaaaataaaagaaaaaaaatattatgtgaaaagtaacaattatattaaccac |
2832471 |
T |
|
| Q |
219 |
gtacaaaaacgtatattaagcaacccttagattgataataattatgtagcaaagaatactaaccagcttttgttttcttgtaaatgagcagattttagtc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2832470 |
gtacaaaaacgtatattaagcaacccttagattgataataattatgtagcaaagaatactaaccagcttttgttttcttgtaactgagcagattttagtc |
2832371 |
T |
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| Q |
319 |
caccttctaagtg |
331 |
Q |
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||||||||||||| |
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| T |
2832370 |
caccttctaagtg |
2832358 |
T |
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