View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_35 (Length: 337)
Name: NF1734_low_35
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 41312931 - 41312624
Alignment:
| Q |
12 |
aagagcttggttttcccatttgcgaaagggaactttgtaagaaacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaa |
111 |
Q |
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| T |
41312931 |
aagagcttggttttcccatttgcgaaagggaactttgtaagaaacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaa |
41312832 |
T |
|
| Q |
112 |
cttttcgtgttaattaattggattttttgctccataattcaaaacccttaaactaataagctcactgtttacgcatggttcatgacttctgatcactatt |
211 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41312831 |
cttttcgtgttaatt----ggattttttgctccataattcaaaacccttaaactaataagctcactgtttacgcatggttcatgacttctgatcactatt |
41312736 |
T |
|
| Q |
212 |
tttctgagacaatgacttcatgtcactactactagtaacaggagtgtgcattttagtccactatttatgtataattcttcttgattcatgttaacacccc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41312735 |
tttctgagacaatgacttcatgtcactactactagtaacaggagtgtgcattttagtccactatttatgtataattcttcttgattcatgttaacccccc |
41312636 |
T |
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| Q |
312 |
agcacatatata |
323 |
Q |
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||||||||||| |
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| T |
41312635 |
ggcacatatata |
41312624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 16308264 - 16308008
Alignment:
| Q |
12 |
aagagcttggttttcccatttgcgaaagggaactttgtaagaaacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaa |
111 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16308264 |
aagagcttggttttcccatttgcgaaaggaaactttgtaagaaacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaa |
16308165 |
T |
|
| Q |
112 |
cttttcgtgttaattaattggattttttgctccataattcaaaacccttaaactaataagctcactgtttacgcatggttcatgacttctgatcactatt |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16308164 |
cttttcgtgtt----aattggattttttgctccataattcaaaacccttaaactaataagctcactgtttacgcatgg----tgacttctgatcactatt |
16308073 |
T |
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| Q |
212 |
tttctgagacaatgacttcatgtcactactactagtaacaggagtgtgcattttagtccactatttatgtataa |
285 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16308072 |
tttctgaga---------catgtcactactactagtaacaggagtgtgcattttagtccactatttatgtataa |
16308008 |
T |
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