View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_36 (Length: 336)
Name: NF1734_low_36
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 41904361 - 41904676
Alignment:
| Q |
1 |
ggaacaaacactgcatttgaggatgaaaactgttgctgaaacagaacaggtttttctgaacctctataggaatttgcaacatgtggagaaagatttgatc |
100 |
Q |
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| T |
41904361 |
ggaacaaacactgcatttgaggatgaaaactgttgctgaaacagaacaggtttttctgaacctctataggaatttgcaacatgtggagaaagatttgatc |
41904460 |
T |
|
| Q |
101 |
ttagaccaaacttttgtgctactgttgggtattggtgcctcttatcagtcatcatcaatgctttgagtgcttaattttgttgttaatattgttaacttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41904461 |
ttagaccaaacttttgtgctactgttgggtattggtgcctcttatcagtcatcatcaatgctttgagtgcttaattttgttgttaatattgttaacttac |
41904560 |
T |
|
| Q |
201 |
tgcaaattgcaccaaaacaaattatgttaggctaattatgttatgtactttaaggagataatggagacttatgctgtttgagaaatcaagagtaaacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41904561 |
tgcaaattgcaccaaaacaaattatgttaggctaattatgttatgtactttaaggaaataatggagacttatgctgtttgagaaatcaagagtaaacatt |
41904660 |
T |
|
| Q |
301 |
gaattacaaaataaca |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
41904661 |
gaattacaaaataaca |
41904676 |
T |
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