View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_37 (Length: 335)

Name: NF1734_low_37
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_37
NF1734_low_37
[»] chr2 (11 HSPs)
chr2 (21-335)||(8378943-8379257)
chr2 (114-335)||(30395694-30395915)
chr2 (167-335)||(30476520-30476688)
chr2 (166-335)||(23783299-23783468)
chr2 (114-335)||(30384942-30385163)
chr2 (136-322)||(30484667-30484853)
chr2 (166-335)||(23768614-23768783)
chr2 (122-335)||(30425235-30425448)
chr2 (114-335)||(30431260-30431481)
chr2 (167-321)||(30437568-30437722)
chr2 (122-335)||(30469334-30469547)
[»] chr5 (1 HSPs)
chr5 (117-335)||(41626792-41627010)
[»] chr8 (3 HSPs)
chr8 (165-324)||(15858500-15858659)
chr8 (165-318)||(15865574-15865727)
chr8 (170-318)||(15851606-15851754)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 8379257 - 8378943
Alignment:
Q  21 ctatgattttgtatgaggttctaaggttgtatccaccagcatttggtgttactcgatatgttggcaaagacataaagtttggaaacatggaagtacctgc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379257 ctatgattttgtatgaggttctaaggttgtatccaccagcatttggtgttactcgatatgttggcaaagacataaagtttggaaacatggaagtacctgc 8379158  T
Q  121 tggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaagga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379157 tggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaagga 8379058  T
Q  221 atttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatgg 320  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8379057 atttccaaagcaacaaatggtagatttatatattttccatttggagggggtcctagagtttgcatgggacaaaacttttccctattggaagcaaagatgg 8378958  T
Q  321 cagtgtcaatgattt 335  Q
    |||||||||||||||    
T  8378957 cagtgtcaatgattt 8378943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 30395694 - 30395915
Alignment:
Q  114 tacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgc 213  Q
    |||||||||||||||| ||||||||||||||| ||||| |||| ||| ||    |||||||||| |||||||| || ||||||||||||||||||||| |    
T  30395694 tacctgctggagtggaggttttcttaccaattcttttgattcatcatgactgcaaactatggggcgatgatgctaaaatgttcaatcctgagagattttc 30395793  T
Q  214 tgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagca 313  Q
     | ||||||||| |||||||||||||||||| ||  || ||| ||||||||| ||||||| ||| ||||||| |||||||| ||||||||| ||||||||    
T  30395794 cggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggggtccaagaatttgcattggacaaaacttttccctaatggaagca 30395893  T
Q  314 aagatggcagtgtcaatgattt 335  Q
    ||||||||| ||||||||||||    
T  30395894 aagatggcattgtcaatgattt 30395915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 167 - 335
Target Start/End: Original strand, 30476520 - 30476688
Alignment:
Q  167 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 266  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||  || ||| ||||||||||    
T  30476520 gaactatggggtgaagatgctaaggtgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggag 30476619  T
Q  267 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattt 335  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||||||||||||||||| || |||||||||    
T  30476620 ggggtccaagaatttgcattggacaaaatttttccatgttggaagcaaagatggcaatggcaatgattt 30476688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 23783468 - 23783299
Alignment:
Q  166 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 265  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||  |||||| || ||||||    
T  23783468 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23783369  T
Q  266 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattt 335  Q
    | |||||||||| | ||||| |||||||| |||||||| |||||||||||||||||| || || ||||||    
T  23783368 gcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatggcaatggcattgattt 23783299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 30384942 - 30385163
Alignment:
Q  114 tacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgc 213  Q
    ||||||||||||||||  |||||||||||||| ||||| |||| ||| ||   |||||||||||||||||||| || |||||||||||||| ||||||      
T  30384942 tacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttt 30385041  T
Q  214 tgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagca 313  Q
    || |||||||||||||||||||||||| ||| ||  || ||| ||||||||| |||||||| || ||||||| |||||||| ||||| ||| ||||||||    
T  30385042 tggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagca 30385141  T
Q  314 aagatggcagtgtcaatgattt 335  Q
    || |||||| || || ||||||    
T  30385142 aaaatggcaatgacattgattt 30385163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 322
Target Start/End: Original strand, 30484667 - 30484853
Alignment:
Q  136 cttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaaca 235  Q
    |||||||||  ||| | |||| || ||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| |||| |||||||||    
T  30484667 cttaccaatagtttggattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaaca 30484766  T
Q  236 aatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggca 322  Q
    |||||||||  |  || ||| ||||||||||||||||||||| |||| || |||||||| |||||| | ||||||||||||||||||    
T  30484767 aatggtagaaattcattttttccatttggagggggtcctagaatttgtattggacaaaacttttccatgttggaagcaaagatggca 30484853  T

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Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 335
Target Start/End: Original strand, 23768614 - 23768783
Alignment:
Q  166 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 265  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||  |||||| || ||||||    
T  23768614 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23768713  T
Q  266 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattt 335  Q
    |  ||||||||| | ||||| ||||| |  ||||| ||||||||||||||||||||| || || ||||||    
T  23768714 gcaggtcctagaatctgcattggacagaccttttctctattggaagcaaagatggcaatggcattgattt 23768783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 335
Target Start/End: Original strand, 30425235 - 30425448
Alignment:
Q  122 ggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaa 221  Q
    |||||| | ||||||||| | || |||||| |||| ||| |||  |||||||||||||||||||| ||| |||||||||| ||||||||| | |||||      
T  30425235 ggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgatgatgctaaggtgttcaatcccgagagattttcagaaggtg 30425334  T
Q  222 tttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggc 321  Q
    |||  |||||||||||||| |||  |  || ||| ||||||||||||||||||||| ||||||| |||||||| |||||  | |||||||||||||||||    
T  30425335 ttttaaaagcaacaaatggaagaaattcattttttccatttggagggggtcctagaatttgcattggacaaaacttttctatgttggaagcaaagatggc 30425434  T
Q  322 agtgtcaatgattt 335  Q
    | |  |||||||||    
T  30425435 aatagcaatgattt 30425448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 30431260 - 30431481
Alignment:
Q  114 tacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgc 213  Q
    ||||||| |||||| | ||||||||| | || |||||| |||| ||| |||  |||||||||||||| ||||| ||| |||||||||| ||||||||| |    
T  30431260 tacctgcaggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccgagagattttc 30431359  T
Q  214 tgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagca 313  Q
     |||||  |||  |||||||||||||| |||  |  || | | ||||||| ||||||||||||| |||| || |||||||| |||||| | |||||||||    
T  30431360 agaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaagggggtcctagaatttgaattggacaaaacttttccatgttggaagca 30431459  T
Q  314 aagatggcagtgtcaatgattt 335  Q
    ||||||||| |  |||||||||    
T  30431460 aagatggcaatagcaatgattt 30431481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 321
Target Start/End: Original strand, 30437568 - 30437722
Alignment:
Q  167 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 266  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| |||||||  |||  |||||||||||||| |||  |  || | | ||||||||||    
T  30437568 gaactatggggtgacgatgctaaggtgttcaatcctgagagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggag 30437667  T
Q  267 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggc 321  Q
    ||||||||||| ||||||| ||||| || |||||  | |||||||||||||||||    
T  30437668 ggggtcctagaatttgcattggacagaacttttctatgttggaagcaaagatggc 30437722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 335
Target Start/End: Original strand, 30469334 - 30469547
Alignment:
Q  122 ggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaa 221  Q
    |||||| | ||||||||| | || ||| || |||| ||| |||  |||||||||||||| ||||| ||| |||||||||| ||||||||| |||||||      
T  30469334 ggagtgcaggttttcttatcgataattatggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccgagagattttctgaaggtg 30469433  T
Q  222 tttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggc 321  Q
    |||  |||||||| ||||| |||  |  || ||| ||||||| ||||||||||||| ||||||| ||||| || |||||| | |||||||||||||||||    
T  30469434 ttttaaaagcaaccaatggaagaaattcattttttccatttgcagggggtcctagaatttgcattggacagaacttttccatgttggaagcaaagatggc 30469533  T
Q  322 agtgtcaatgattt 335  Q
    | |  |||||||||    
T  30469534 aatagcaatgattt 30469547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 117 - 335
Target Start/End: Complemental strand, 41627010 - 41626792
Alignment:
Q  117 ctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctga 216  Q
    ||||||||||||| |||||| | |||||||| ||| | || ||| |   |||| |||||||||||||||| || |||||||||||||| |||||| |||     
T  41627010 ctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctgg 41626911  T
Q  217 aggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaag 316  Q
    |||||||||||||||||| || |||||| ||  || ||| ||||||||| ||||||||||  | ||||| || ||||| ||||| |||||||||||||||    
T  41626910 aggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattgggcaaaacttttctctattggaagcaaag 41626811  T
Q  317 atggcagtgtcaatgattt 335  Q
    |||||| || || ||||||    
T  41626810 atggcaatgacattgattt 41626792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 324
Target Start/End: Complemental strand, 15858659 - 15858500
Alignment:
Q  165 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 264  Q
    |||| |||||||||||||||||||||  |||||| ||||| || ||||||||||||||| | || |||||||| ||   | ||   |||||||| |||||    
T  15858659 atgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttgg 15858560  T
Q  265 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagt 324  Q
    | ||||||||||| ||||  | |||||||| ||| || |||| ||||||||||| |||||    
T  15858559 atggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcagt 15858500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 15865727 - 15865574
Alignment:
Q  165 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 264  Q
    |||| |||||||||||||||||||||  |||||| ||||| || ||||||||||||||| | || || ||||| || | | ||   |||||||| |||||    
T  15865727 atgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttgg 15865628  T
Q  265 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagat 318  Q
    | ||||||||||| ||||  | |||||||| ||| || || | |||||||||||    
T  15865627 atggggtcctagaatttgtcttggacaaaactttgccttactagaagcaaagat 15865574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 318
Target Start/End: Complemental strand, 15851754 - 15851606
Alignment:
Q  170 ctatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggg 269  Q
    |||||||||||||||||||||| ||||||||||||  | ||| ||||||||||| | || || ||||| ||   | ||   ||| |||| |||||| |||    
T  15851754 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcccttttggatggg 15851655  T
Q  270 gtcctagagtttgcatgggacaaaatttttccctattggaagcaaagat 318  Q
    |||||||| ||||  | |||||||| ||| || |||| |||||||||||    
T  15851654 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 15851606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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