View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_43 (Length: 296)
Name: NF1734_low_43
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 2833224 - 2833085
Alignment:
| Q |
10 |
aagaatatagaagaacaatggaaacaaataaagggtagaagagaagttttgatatcatcacctaaataaagttagagagaatgaaaggcaagtctggttt |
109 |
Q |
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| T |
2833224 |
aagaatatagaagaacaatggaaacaaataaagggtagaagagaagtattgatatattcacctaaatagagttagagagaatgaaaggcaagtctggttt |
2833125 |
T |
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| Q |
110 |
gaagaattaatcatttgatgtcgtttcatatgaaaatgag |
149 |
Q |
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| T |
2833124 |
gaagaattaatcatttgatgtcgtttcatatgaaaatgag |
2833085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 2833017 - 2832939
Alignment:
| Q |
217 |
cttctggtaacatactaaca---tagtgaggca-cagatctggtttctggaatatacatcttcctatcatcatctatca |
291 |
Q |
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| T |
2833017 |
cttctggtaaaatactaacaacatagtgaggcaacagatctggtttctggaatatacatcttcctatcattatctatca |
2832939 |
T |
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