View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_45 (Length: 284)
Name: NF1734_low_45
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_45 |
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| [»] scaffold0565 (2 HSPs) |
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| [»] scaffold0808 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 4197 - 4350
Alignment:
| Q |
119 |
gtgacataatatgagccattagatcaattcattataacggttgatatttgatgtaaccctagtgttaacggattctaactcatataatgcatatagaaaa |
218 |
Q |
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| T |
4197 |
gtgacataatatgagccattagatcaattcattataacggttgatatttggtgtaaccctagtgttaacggattctaacttatataatgcatatagaaaa |
4296 |
T |
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| Q |
219 |
agagtctgaccctaatttgctgagcatatgctttaataaggacattagcctatt |
272 |
Q |
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| T |
4297 |
agagtctgaccctgagttgctgagcatatgcttgaagaaggacattagcatatt |
4350 |
T |
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Target: scaffold0565; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4124 - 4195
Alignment:
| Q |
1 |
ccaactccaaataacgccattttccttgccccataattatataaaatctgaatcacaaacacaaaaattgaa |
72 |
Q |
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| T |
4124 |
ccaactccaaataacgccattttccttgccccataattatataaaatctgaattacaaacacaaaaattgaa |
4195 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 7615709 - 7615647
Alignment:
| Q |
7 |
ccaaataacgccattttccttgccccataattatataaaatctgaatcacaaacacaaaaatt |
69 |
Q |
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| T |
7615709 |
ccaaataaagccattttccttgctccatagttatacaaaatctaagtcacaaacacaacaatt |
7615647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 21723378 - 21723432
Alignment:
| Q |
120 |
tgacataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
174 |
Q |
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| T |
21723378 |
tgacataatatgaactcttagatcaattaattacaacggttgagatttgatgtaa |
21723432 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 1614432 - 1614469
Alignment:
| Q |
126 |
aatatgagccattagatcaattcattataacggttgat |
163 |
Q |
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| T |
1614432 |
aatatgagccattggatcaattaattataacggttgat |
1614469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0808 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0808
Description:
Target: scaffold0808; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 5012 - 5064
Alignment:
| Q |
122 |
acataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
174 |
Q |
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| T |
5012 |
acataatatgagtcattagatcaaataattataacggttaagatttggtgtaa |
5064 |
T |
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