View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_53 (Length: 260)
Name: NF1734_low_53
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24189175 - 24188931
Alignment:
| Q |
1 |
agtactgcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagggtc |
100 |
Q |
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| T |
24189175 |
agtactgcttctccgtcttcatattgcgacggatagcgatgctctggtgcaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtc |
24189076 |
T |
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| Q |
101 |
tacgacaaaccgcatcggagaggttcgaggaagaagagagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtgga |
200 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24189075 |
tacgacaaaccgcatcgtagaggtttgaggaagaagaaagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtgga |
24188976 |
T |
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| Q |
201 |
accaccatcttcggtgacttctccggcaacagttggagtaaagag |
245 |
Q |
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| T |
24188975 |
accaccatcttcggtgacttctccggcaacagttggagtaaagag |
24188931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24179369 - 24179125
Alignment:
| Q |
1 |
agtactgcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagggtc |
100 |
Q |
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| T |
24179369 |
agtactgcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtc |
24179270 |
T |
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| Q |
101 |
tacgacaaaccgcatcggagaggttcgaggaagaagagagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtgga |
200 |
Q |
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| T |
24179269 |
tacggcaaacagcgtcgtagaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgacgacaggaagggaggttgctttggtggc |
24179170 |
T |
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| Q |
201 |
accaccatcttcggtgacttctccggcaacagttggagtaaagag |
245 |
Q |
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| T |
24179169 |
accaccatctccggtgacttctccggcaacagtgggggtaaagag |
24179125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 24168927 - 24168689
Alignment:
| Q |
7 |
gcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagggtctacgac |
106 |
Q |
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| T |
24168927 |
gcttctccgtcttcgtattgcgacggatagcaatgctccggtgtgaggcggtagttgacagagacaacaacaacggatatttcccggcagagtctacggc |
24168828 |
T |
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| Q |
107 |
aaaccgcatcggagaggttcgaggaagaagagagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccacc |
206 |
Q |
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| T |
24168827 |
aaaaagcatcatagtagatagaggaggggcaaagataggtgaagccaccaccgtggaagaaaatgacaacgggaagggaggttgttttggttgcaccacc |
24168728 |
T |
|
| Q |
207 |
atcttcggtgacttctccggcaacagttggagtaaagag |
245 |
Q |
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|||| || |||||||||| ||||||| || |||||||| |
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| T |
24168727 |
atctccgacgacttctccgccaacagtgggtgtaaagag |
24168689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 24152097 - 24151877
Alignment:
| Q |
10 |
tctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagggtctacgacaaa |
109 |
Q |
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||||| || |||||||| |||||||| | |||||| |||||||| ||||||||||| ||||| | |||||| | | ||||| |||| ||||||| || | |
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| T |
24152097 |
tctccatcatcatattgcgacggatatctatgctccggtgtaaggcggtagttgacagagacgacaacagcgaaaacttccctgcagagtctacggcata |
24151998 |
T |
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| Q |
110 |
ccgcatcg-gagaggttcgaggaagaagagagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccat |
208 |
Q |
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| T |
24151997 |
aagcatcgtgatagatt-gaggagggggaaagaaaactgaagccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtggcaccaccat |
24151899 |
T |
|
| Q |
209 |
cttcggtgacttctccggcaac |
230 |
Q |
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|| | || || ||||||||||| |
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| T |
24151898 |
ctccagtaacctctccggcaac |
24151877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 24112812 - 24112748
Alignment:
| Q |
7 |
gcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagac |
71 |
Q |
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|||||||||||||| ||||| || |||||||||||||| ||||| | ||||||||||||||||| |
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| T |
24112812 |
gcttctccgtcttcgtattgcgatggataccgatgctccggtgtgtgacggtagttgacggagac |
24112748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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