View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_56 (Length: 252)
Name: NF1734_low_56
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_56 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 12200109 - 12200338
Alignment:
| Q |
19 |
tccttttcactggaccataattttctgcttcacagaggttacgatttctatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaa |
118 |
Q |
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| T |
12200109 |
tccttttcactggaccataattttctgcttcacagaggttactatttccatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaa |
12200208 |
T |
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| Q |
119 |
atatctacgtatggaatccatcctctaggtttcacnnnnnnntacctttgtctccttttgatttgaagttacatacattccatcgacatcatctatatgg |
218 |
Q |
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| T |
12200209 |
atatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatgg |
12200308 |
T |
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| Q |
219 |
ttttggttattaccactcaacagatgatta |
248 |
Q |
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| T |
12200309 |
ttttggttatgaccggtcaagagatgatta |
12200338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 12444537 - 12444766
Alignment:
| Q |
19 |
tccttttcactggaccataattttctgcttcacagaggttacgatttctatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaa |
118 |
Q |
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| T |
12444537 |
tccttttcactggaccataattttctgcttcacagaggttactatttccatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaa |
12444636 |
T |
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| Q |
119 |
atatctacgtatggaatccatcctctaggtttcacnnnnnnntacctttgtctccttttgatttgaagttacatacattccatcgacatcatctatatgg |
218 |
Q |
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| T |
12444637 |
atatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatgg |
12444736 |
T |
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| Q |
219 |
ttttggttattaccactcaacagatgatta |
248 |
Q |
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| T |
12444737 |
ttttggttatgaccggtcaagagatgatta |
12444766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 12195150 - 12195236
Alignment:
| Q |
67 |
tatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcac |
153 |
Q |
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| T |
12195150 |
tatgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcac |
12195236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 12439578 - 12439664
Alignment:
| Q |
67 |
tatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcac |
153 |
Q |
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| T |
12439578 |
tatgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagatttcac |
12439664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 50251010 - 50250827
Alignment:
| Q |
69 |
tgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttcacnnnnnnntacctttg |
168 |
Q |
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| T |
50251010 |
tgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttg |
50250911 |
T |
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| Q |
169 |
tctccttttgatttgaagttacatacattccatcgacatcatctatatggttttggttattaccactcaacagatgattatttg |
252 |
Q |
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| T |
50250910 |
tctcattttgattccaaattaaagaaatatcattccaatcatctatatggttttggttatgaccactcaacagatgattatttg |
50250827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 45372289 - 45372251
Alignment:
| Q |
69 |
tgaaattaaaggttcatgcagagggtttatattcttgca |
107 |
Q |
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| T |
45372289 |
tgaaattaaaggttcatgtagagggtttatatttttgca |
45372251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 7877581 - 7877653
Alignment:
| Q |
69 |
tgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcc |
141 |
Q |
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| T |
7877581 |
tgaaattagaggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatcc |
7877653 |
T |
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