View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_6 (Length: 553)

Name: NF1734_low_6
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_6
NF1734_low_6
[»] chr7 (5 HSPs)
chr7 (26-541)||(22787821-22788334)
chr7 (29-69)||(40078664-40078704)
chr7 (286-343)||(9939417-9939474)
chr7 (286-343)||(10027635-10027692)
chr7 (286-343)||(36698735-36698792)
[»] chr5 (2 HSPs)
chr5 (31-80)||(35257333-35257382)
chr5 (31-63)||(27837133-27837165)
[»] chr4 (5 HSPs)
chr4 (277-356)||(29800510-29800589)
chr4 (46-109)||(37951616-37951679)
chr4 (286-343)||(25887276-25887333)
chr4 (286-343)||(29690925-29690982)
chr4 (286-343)||(48694727-48694784)
[»] chr1 (5 HSPs)
chr1 (286-361)||(496962-497037)
chr1 (29-120)||(43034330-43034416)
chr1 (29-93)||(42947853-42947917)
chr1 (31-67)||(15252194-15252230)
chr1 (301-341)||(52090046-52090086)
[»] chr8 (3 HSPs)
chr8 (29-111)||(26273981-26274063)
chr8 (286-343)||(45193850-45193907)
chr8 (301-361)||(4491445-4491505)
[»] chr3 (3 HSPs)
chr3 (290-343)||(35656476-35656529)
chr3 (30-69)||(1550449-1550488)
chr3 (286-342)||(40740229-40740285)
[»] chr2 (4 HSPs)
chr2 (295-343)||(17388037-17388085)
chr2 (286-343)||(26646370-26646428)
chr2 (241-282)||(18483675-18483716)
chr2 (29-69)||(26979543-26979583)
[»] scaffold0369 (1 HSPs)
scaffold0369 (286-343)||(14390-14447)


Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 26 - 541
Target Start/End: Original strand, 22787821 - 22788334
Alignment:
Q  26 tctatgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaattaaattgttcttcac 125  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22787821 tctatgatctgttatgtatgtgcatataatatcaactattgattcgtttatcaactgttgatattacttactttactctttaaattaaattgttcttcac 22787920  T
Q  126 tttagagaactatgatcagtcatggccgtcattctaatagttgaacccaggacctcaacaattataccaccgagctcaaccactacgccatatgttttca 225  Q
    |||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  22787921 tttagagaactatgattagtcatggtcgtcgttctgatagttgaacccaggacctcaacgattataccaccgagctcaaccactacgccat--gttttca 22788018  T
Q  226 gcgttgcacattttgcaacgctactagtatatatcaatattttacatgcataatatatataaaaatattttgggtcccaaaattttggaggtccaactct 325  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22788019 gcgttgcacatttcacaacgctactagtatatatctatattttacatgcataatatatataaaaatattttgggtcccaaaattttggaggtccaactct 22788118  T
Q  326 atagaactgtttgcaccttcctaaagacggctctgaaactagtcaaacatgatcttgactcttgaaactaactaataaacaaacacataatactctttgc 425  Q
    ||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  22788119 atacaactgtttgcaccttcacagagacggctctgaaactagtcaaacatgatcttgactcttaaaactaactaataaacaaacacataagactctttgc 22788218  T
Q  426 cattggctctgaaaatatataactttgttatactaaatgtattctaatttttgcttgtggacatttattacaaatagaaaaataatcaatgtggaagaag 525  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22788219 cattggctctgaaaaaatataactttgttatactaaatgtattctaatttttgcttgtggacatttattacaaatagaaaaataatcaatgtggaagaag 22788318  T
Q  526 tattacctatgagtat 541  Q
    ||||||||||||||||    
T  22788319 tattacctatgagtat 22788334  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 40078704 - 40078664
Alignment:
Q  29 atgatttgttatgtatgtgcatataatatcaactattgatt 69  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  40078704 atgatttgttatgtatgtgtatataatatcaaccattgatt 40078664  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 9939417 - 9939474
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  9939417 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 9939474  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 10027692 - 10027635
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  10027692 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 10027635  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 36698735 - 36698792
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  36698735 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 36698792  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 35257333 - 35257382
Alignment:
Q  31 gatttgttatgtatgtgcatataatatcaactattgattcgattatcaac 80  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  35257333 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaac 35257382  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 27837133 - 27837165
Alignment:
Q  31 gatttgttatgtatgtgcatataatatcaacta 63  Q
    ||||||||||| |||||||||||||||||||||    
T  27837133 gatttgttatgcatgtgcatataatatcaacta 27837165  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 29800510 - 29800589
Alignment:
Q  277 aatatatataaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcaccttcctaaagacggc 356  Q
    |||| ||| |||||||||||||  || ||||||  ||||| |||||||||||||||||||||||| | | ||||||||||    
T  29800510 aataaataaaaaaatattttggaccctaaaattggggaggcccaactctatagaactgtttgcacatccttaaagacggc 29800589  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 37951616 - 37951679
Alignment:
Q  46 tgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaa 109  Q
    |||||||| ||||||| | ||||| | |||||||| |||||||||||| |||||||||| ||||    
T  37951616 tgcatatattatcaaccagtgatttgtttatcaacagttgatattactcactttactctctaaa 37951679  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 25887276 - 25887333
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  25887276 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 25887333  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 29690925 - 29690982
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  29690925 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 29690982  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 48694784 - 48694727
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  48694784 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 48694727  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 496962 - 497037
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcaccttcctaaagacggctctga 361  Q
    |||||||||||||| |||||||||  ||||| |||||||||||||  ||||||||||| ||||  |||||| ||||    
T  496962 aaaaatattttgggccccaaaattggggaggcccaactctatagagttgtttgcacctccctagggacggccctga 497037  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 43034416 - 43034330
Alignment:
Q  29 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaattaaattgttc 120  Q
    ||||||||||||||  ||||||||||||||||   |||||| | |||  ||| |||||||||||| ||||||||||||||| | ||||||||    
T  43034416 atgatttgttatgt--gtgcatataatatcaa---ttgatttgtttaaaaacagttgatattactcactttactctttaaagtgaattgttc 43034330  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 42947853 - 42947917
Alignment:
Q  29 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattact 93  Q
    |||||||||| |  || |||||||||||||||| ||||||| | |||||||| ||||||||||||    
T  42947853 atgatttgttttacatttgcatataatatcaaccattgatttgtttatcaacggttgatattact 42947917  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 15252230 - 15252194
Alignment:
Q  31 gatttgttatgtatgtgcatataatatcaactattga 67  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  15252230 gatttgttatgcatgtccatataatatcaactattga 15252194  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 52090086 - 52090046
Alignment:
Q  301 cccaaaattttggaggtccaactctatagaactgtttgcac 341  Q
    |||||||||||||||| ||||||| ||||| ||||||||||    
T  52090086 cccaaaattttggaggcccaactccatagagctgtttgcac 52090046  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 26274063 - 26273981
Alignment:
Q  29 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaatt 111  Q
    ||||||||||||| ||| ||||||||||| ||| |||| || | |||||||| |||| |||||||   |||||||||||||||    
T  26274063 atgatttgttatgcatgcgcatataatattaaccattggtttgtttatcaacggttggtattactcgttttactctttaaatt 26273981  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 45193850 - 45193907
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  45193850 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 45193907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 4491505 - 4491445
Alignment:
Q  301 cccaaaattttggaggtccaactctatagaactgtttgcaccttcctaaagacggctctga 361  Q
    |||||||||  ||||||||||||| ||||| |||||||||||| || | ||||||| ||||    
T  4491505 cccaaaattggggaggtccaactcaatagagctgtttgcacctccccatagacggccctga 4491445  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 35656476 - 35656529
Alignment:
Q  290 atattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||| |||||||||  ||||||||| ||||||||| ||||||||||||    
T  35656476 atattttgggccccaaaattggggaggtccagctctatagagctgtttgcacct 35656529  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 1550449 - 1550488
Alignment:
Q  30 tgatttgttatgtatgtgcatataatatcaactattgatt 69  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  1550449 tgatttgttatgcatgtgcatataatatcaaccattgatt 1550488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 40740285 - 40740229
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacc 342  Q
    |||||||||||||| | |||||||| ||||| |||||||  |||| |||||||||||    
T  40740285 aaaaatattttgggcctcaaaatttaggaggcccaactcagtagagctgtttgcacc 40740229  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 17388037 - 17388085
Alignment:
Q  295 ttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    ||||| |||||||||  ||||||||||||||||||| ||||||||||||    
T  17388037 ttgggccccaaaattgaggaggtccaactctatagagctgtttgcacct 17388085  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 26646428 - 26646370
Alignment:
Q  286 aaaaatattttggg-tcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| ||||||||||  ||||| ||| ||||||||| ||||||||||||    
T  26646428 aaaaatattttgggctcccaaaattggggaggcccagctctatagagctgtttgcacct 26646370  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 18483675 - 18483716
Alignment:
Q  241 caacgctactagtatatatcaatattttacatgcataatata 282  Q
    |||||||| |||||||||| |||||||||||||||| |||||    
T  18483675 caacgctaatagtatatattaatattttacatgcattatata 18483716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 26979543 - 26979583
Alignment:
Q  29 atgatttgttatgtatgtgcatataatatcaactattgatt 69  Q
    ||||||||||||| |||| |||||||||||||| |||||||    
T  26979543 atgatttgttatgcatgtacatataatatcaaccattgatt 26979583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 14447 - 14390
Alignment:
Q  286 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 343  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  14447 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 14390  T

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