View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_73 (Length: 233)
Name: NF1734_low_73
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_73 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 8332769 - 8332988
Alignment:
| Q |
12 |
cattttttcccagtccacacgtatgtgagcaatttctaaaagaggttgttgttttgttccatcaactaaaaattgagattgtataaatgacaaaatttct |
111 |
Q |
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| T |
8332769 |
catttttccccactccgcacgtatttgagcaatttgtaaaagaggttgttgttttgttccatcaactaaaaattgagattgtataaataacaaaatttct |
8332868 |
T |
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| Q |
112 |
ctagnnnnnnnnnccttcatataacacaaaagattatctttgttagtgaatataatttgaacattaaatggatggacgataaaattacaggtttaagata |
211 |
Q |
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| T |
8332869 |
ctagttttttt--ccttcatataagacaaaagattatctttgttaatgaatataatttgaacattaaatggatggacgataaaattacaggtttaagata |
8332966 |
T |
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| Q |
212 |
agaaggaagcaggaaaatacac |
233 |
Q |
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| T |
8332967 |
agaaggaagcaggaaaatacac |
8332988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 8341217 - 8341368
Alignment:
| Q |
12 |
cattttttcccagtccacacgtatgtgagcaatttctaaaagaggttgttgttttgttccatcaactaaaaattgagattgtataaatgacaaaatttct |
111 |
Q |
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| T |
8341217 |
catttttccccactccacacgtatgtgagcaatttgtaaaagaggttgttgttttgttccatcaactaaaaattgagattgtataaatgacaaaatttct |
8341316 |
T |
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| Q |
112 |
ctagnnnnnnnnnccttcatataacacaaaagattatctttgttagtgaatata |
165 |
Q |
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| T |
8341317 |
ctag--tttttttccttcatataagacaaaagattatctttgttagtgaatata |
8341368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 8341395 - 8341432
Alignment:
| Q |
196 |
ttacaggtttaagataagaaggaagcaggaaaatacac |
233 |
Q |
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| T |
8341395 |
ttacaggtttaagataagaaggaagcaggaaaatacac |
8341432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 29229315 - 29229205
Alignment:
| Q |
126 |
cttcatataacacaaaagattatctttgttagtgaatataattt---gaacattaaatggatggacgataaaattacaggtttaagataagaaggaagca |
222 |
Q |
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| T |
29229315 |
cttcataaaagacaaaagattatctttgagagtgaatataattttttgaacattaaatgaatggacgataaaattacaggttaacaataagaaggaagca |
29229216 |
T |
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| Q |
223 |
ggaaaatacac |
233 |
Q |
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| T |
29229215 |
ggaaaatacac |
29229205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 29342615 - 29342505
Alignment:
| Q |
126 |
cttcatataacacaaaagattatctttgttagtgaatataattt---gaacattaaatggatggacgataaaattacaggtttaagataagaaggaagca |
222 |
Q |
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||||||| || ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
29342615 |
cttcataaaagacaaaagattatctttgagagtgaatataattttttgaacattaaatgaatggacgataaaattacaggttaacaataagaaggaagca |
29342516 |
T |
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| Q |
223 |
ggaaaatacac |
233 |
Q |
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| T |
29342515 |
ggaaaatacac |
29342505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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