View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_74 (Length: 233)
Name: NF1734_low_74
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 23860641 - 23860424
Alignment:
| Q |
1 |
ctttatgattatgtatatgtcatatcactaaaatccacttatttttcaattgtgatatttagttctgaaaatttgtgttaaagtgtattcccctcatgat |
100 |
Q |
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| T |
23860641 |
ctttatgcttatgtatatgtcatatcactaaaatccacttatttttcaattgtgatatttagttctgaaaatttgtgttaaagtgtattcccctcatgat |
23860542 |
T |
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| Q |
101 |
atgattaaggctttgtttggattgtcttattttaaacttatatgagtttatattctaacataagcttttgtaaaaatgtttgattaaatagataaaaata |
200 |
Q |
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| T |
23860541 |
atgattaaggctttgtttggattgtcttattttaagcttatatgagtttatattctaacataagcttttgtaaaaatgtttgattaaatagataaaaata |
23860442 |
T |
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| Q |
201 |
agtgtagttacttgttat |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
23860441 |
agtgtagttacttgttat |
23860424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 30270881 - 30270814
Alignment:
| Q |
115 |
gtttggattgtcttattttaaacttatatgagtttatattctaacataagcttttgtaaaaatgtttg |
182 |
Q |
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| T |
30270881 |
gtttggattggcttattttaagcttatatgagtttatctactcccataagcctttttaaaagtgtttg |
30270814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 30075420 - 30075370
Alignment:
| Q |
115 |
gtttggattgtcttattttaaacttatatgagtttatattctaacataagc |
165 |
Q |
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| T |
30075420 |
gtttggattgacttattttaagcttatgtgagtttatctactaacataagc |
30075370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 46760969 - 46761054
Alignment:
| Q |
115 |
gtttggattgtcttattttaaacttatatgagtttatattctaacataagcttttgtaaaaatgtttgattaaatagataaaaata |
200 |
Q |
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|||||||||| |||||||| |||||||||||| |||| | || ||||||| ||| |||| |||||| |||||| ||||||||| |
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| T |
46760969 |
gtttggattgacttattttgaacttatatgagcttatctacttgcataagcctttttaaaggtgtttgggtaaataaataaaaata |
46761054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 5675095 - 5675175
Alignment:
| Q |
102 |
tgattaaggctttgtttggattgtcttattttaaacttatatgagtttatattctaacataagcttttgtaaaaatgtttg |
182 |
Q |
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|||||||||| |||||||||| |||||||||| ||||| | || |||| | ||||||||||||||| ||| ||||||| |
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| T |
5675095 |
tgattaaggccccgtttggattggcttattttaagcttatgttagcttatctactaacataagctttttgaaagatgtttg |
5675175 |
T |
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