View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_78 (Length: 229)
Name: NF1734_low_78
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 6916018 - 6915848
Alignment:
| Q |
44 |
attgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccat |
143 |
Q |
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| T |
6916018 |
attgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccat |
6915919 |
T |
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| Q |
144 |
cttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
214 |
Q |
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| T |
6915918 |
cttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctg |
6915848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 6915048 - 6915080
Alignment:
| Q |
15 |
agttgttgatcttgtgaagttaaaggcctattg |
47 |
Q |
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| T |
6915048 |
agttgttgatcttgtgaagttaaaggcctattg |
6915080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 15039303 - 15039391
Alignment:
| Q |
44 |
attgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaacc |
132 |
Q |
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| T |
15039303 |
attgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggggctttccaactgtagcatcaacc |
15039391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
146 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
200 |
Q |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 15047814 - 15047785
Alignment:
| Q |
17 |
ttgttgatcttgtgaagttaaaggcctatt |
46 |
Q |
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| T |
15047814 |
ttgttgatcttgtgaagttaaaggcctatt |
15047785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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