View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_low_79 (Length: 228)
Name: NF1734_low_79
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 1141425 - 1141231
Alignment:
| Q |
16 |
ataattctaggtatccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnngtaaatatatgcaaaatcaattgaattgcattaactttg |
115 |
Q |
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| T |
1141425 |
ataattctaggtatccctgaattcattacataaataattgaatatgatcaatgaaaaaaaagtaaatatatgcaaaatcaattgaattgcattaactttg |
1141326 |
T |
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| Q |
116 |
gtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtg |
210 |
Q |
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| T |
1141325 |
gtgcaaatgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtg |
1141231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 1137966 - 1137770
Alignment:
| Q |
18 |
aattctaggtatccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnn----gtaaatatatgcaaaatcaattgaattgcattaactt |
113 |
Q |
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| T |
1137966 |
aattctaggtatccctgaattcattacatgaatcattgaatgtgatcaatgaagaaaaaaaaagtacatctatgcaaaatcaattgaattgcattaactt |
1137867 |
T |
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| Q |
114 |
tggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtg |
210 |
Q |
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| T |
1137866 |
tggggcaaatgtgagcaatccatccaaagcttgagttccgaatttccttgcaaacaaatgacaaacattggttgtttttccattgtactcacaagtg |
1137770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 31266268 - 31266389
Alignment:
| Q |
89 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
188 |
Q |
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||||||||||||||||||| |||||||| ||||| | |||| || ||||||||| |||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
31266268 |
aaaatcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgt |
31266367 |
T |
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| Q |
189 |
ctttccattgtactcacaagtg |
210 |
Q |
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| T |
31266368 |
ctttccattgtactcacaagtg |
31266389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 54474217 - 54474335
Alignment:
| Q |
89 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
188 |
Q |
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|||||||||||||||||||||| | | ||||| |||||| | ||||||||| | || || ||||||||||||||||||||| |||||||||||||| |
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| T |
54474217 |
aaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgt |
54474316 |
T |
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| Q |
189 |
ctttccattgtactcacaa |
207 |
Q |
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| T |
54474317 |
ccttccattgtactcacaa |
54474335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 48323126 - 48323244
Alignment:
| Q |
89 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
188 |
Q |
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|||||||||||||||||||||||||||| ||| | | | || | ||||||||| |||| | ||| |||||||||||||||||||||| ||| ||| |
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| T |
48323126 |
aaaatcaattgaattgcattaactttggagcatatctaaccaatatatccaaagcatgaggagtgaacttccttgcaaacaaatgacaaa---tggatgt |
48323222 |
T |
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| Q |
189 |
ctttccattgtactcacaagtg |
210 |
Q |
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| T |
48323223 |
ccttccattgtgctcacaagtg |
48323244 |
T |
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