View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_low_9 (Length: 504)

Name: NF1734_low_9
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_low_9
NF1734_low_9
[»] chr2 (2 HSPs)
chr2 (66-494)||(9114804-9115235)
chr2 (183-260)||(3596508-3596585)
[»] chr8 (3 HSPs)
chr8 (150-294)||(35661446-35661589)
chr8 (184-220)||(14529588-14529624)
chr8 (205-285)||(38948632-38948712)
[»] chr3 (2 HSPs)
chr3 (151-294)||(46170431-46170574)
chr3 (149-282)||(39018902-39019034)
[»] chr6 (4 HSPs)
chr6 (152-291)||(10040449-10040588)
chr6 (148-244)||(35019015-35019111)
chr6 (189-291)||(34392123-34392225)
chr6 (189-291)||(34480872-34480973)
[»] chr5 (1 HSPs)
chr5 (147-294)||(42943512-42943659)
[»] chr4 (4 HSPs)
chr4 (153-292)||(41702884-41703023)
chr4 (145-294)||(4513632-4513780)
chr4 (147-291)||(23613137-23613277)
chr4 (162-291)||(19504878-19505007)
[»] chr1 (4 HSPs)
chr1 (210-291)||(29525541-29525622)
chr1 (147-218)||(29525908-29525978)
chr1 (147-244)||(4641813-4641910)
chr1 (207-291)||(30307994-30308078)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 66 - 494
Target Start/End: Complemental strand, 9115235 - 9114804
Alignment:
Q  66 tttactgagttgctgcaagggattgatggtagtttttaggtgcaacaccatatttattgagtttttaggattagaatgcccccaacttacaccactaaaa 165  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||    
T  9115235 tttattgagttgctgcaagggattgatggtagtttttaggtgcaacaccatatttattgagtttttaggattagattgttcc-aacttacaccactaaaa 9115137  T
Q  166 taacagt-ttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaa 264  Q
    |||||   ||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||    
T  9115136 taacacccttgtaacatctttttcatcataagattcggtcctttaaaataaatttataatatatcaatggtttatattgaggtggtgtaagttggagtaa 9115037  T
Q  265 taaatttgatggtccaaactatactttgccattgggatgtcattttgttgtcgtgtgttgtttttgcactttaatattcactt---nnnnnnnnngaata 361  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||            |||||    
T  9115036 tgaatttgatggtccaaactatactttgccattgggatgtcatattgctgtcgtgtgttgtttttgcactttaatgttcacttaaaaaaaaaaaagaata 9114937  T
Q  362 atttaaattagatttaaatgaatgtttagtccgcataaatatatcaagtaagagttatattttcgggagaaaaaagggaacaatgtgttctattttaaca 461  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||    
T  9114936 atttaaattagatttaaataaatgtttagtccgcataaatatatcaagtaagagttatattttggggagaaaaaaaggaacaatgtgctatattttaaca 9114837  T
Q  462 tgaatattatttatttatcatttgtgctctgtg 494  Q
    |||||||||||||||||||||||||||| ||||    
T  9114836 tgaatattatttatttatcatttgtgctatgtg 9114804  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 3596585 - 3596508
Alignment:
Q  183 ttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttgga 260  Q
    ||||||||||| | |||  |||||||| ||||||||||  ||||||||| |  ||||||||| | |||||||||||||    
T  3596585 ttttttatcatgaaatctcgtccgttagaataaatttaaaatatatcaacgacttatattgaagcggtgtaagttgga 3596508  T

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Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 35661589 - 35661446
Alignment:
Q  150 acttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtgg 249  Q
    |||||||||||||||||||||  |||||||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||    
T  35661589 acttacaccactaaaataacaccttgtaacagcttctttatcataagatccggaccgttaaaataaatttataatatatcaatggcttatattg-ggtgg 35661491  T
Q  250 tgtaagttggaacaataaatttgatggtccaaactatactttgcc 294  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||||    
T  35661490 tgtaagttggagcaatgtatttggtggtccaaactatactttgcc 35661446  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 14529588 - 14529624
Alignment:
Q  184 tttttatcataagatccggtccgttaaaataaattta 220  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  14529588 tttttatcatgagatccgatccgttaaaataaattta 14529624  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 38948712 - 38948632
Alignment:
Q  205 cgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaacta 285  Q
    ||||||||||||||||  |||||||||||  ||||||  | || ||||||||| || ||||  |||||||| |||||||||    
T  38948712 cgttaaaataaatttaaaatatatcaatgacttatatcaaagtagtgtaagttagagcaatgtatttgatgatccaaacta 38948632  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 151 - 294
Target Start/End: Original strand, 46170431 - 46170574
Alignment:
Q  151 cttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggt 250  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||  || ||||||||||||||||| ||||||||||||||||||||||  || |    
T  46170431 cttacaccactaaaataacacgttgtaacatcttttttatcgtaagatctcgttcgttaaaataaatttataatatatcaatggtttatattgaaatgat 46170530  T
Q  251 gtaagttggaacaataaatttgatggtccaaactatactttgcc 294  Q
    |||||||||| ||||  ||||||| |||||||||||||||||||    
T  46170531 gtaagttggagcaatgtatttgatagtccaaactatactttgcc 46170574  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 39018902 - 39019034
Alignment:
Q  149 aacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtg 248  Q
    |||||||||||||||||||||  || |||  |  ||||| ||||| |||||||||| |||||||||||||||  ||||||||||| |||| ||| | |||    
T  39018902 aacttacaccactaaaataaccctt-gtagtaattttttcatcatgagatccggtctgttaaaataaatttaaaatatatcaatgatttagattaaagtg 39019000  T
Q  249 gtgtaagttggaacaataaatttgatggtccaaa 282  Q
    |||||||||||| ||||  ||||| |||||||||    
T  39019001 gtgtaagttggaccaatgtatttggtggtccaaa 39019034  T

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Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 152 - 291
Target Start/End: Complemental strand, 10040588 - 10040449
Alignment:
Q  152 ttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtg 251  Q
    |||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||| |||||||| || |||||||||||  |||| |||||||||||    
T  10040588 ttacaccactaaaataacaccttgtaacaactttttcatcataagatccggtccgttagaataaattaataatatatcaatgacttattttgaggtggtg 10040489  T
Q  252 taagttggaacaataaatttgatggtccaaactatacttt 291  Q
    ||||||||| ||||  ||||| ||||||||||||||||||    
T  10040488 taagttggagcaatctatttggtggtccaaactatacttt 10040449  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 35019015 - 35019111
Alignment:
Q  148 caacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattga 244  Q
    ||||||||||||||||||||||  |||||| || |||||| ||||||||||||| ||||||| ||||||||||  |||||||||||| |||||||||    
T  35019015 caacttacaccactaaaataaccctttgtagcagctttttcatcataagatccgatccgttagaataaatttaaaatatatcaatggcttatattga 35019111  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 34392225 - 34392123
Alignment:
Q  189 atcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatac 288  Q
    ||||| |||||| |||||||| ||||||||||  |||||||||||  ||||||||| |||||||||||| || ||||| ||||| |||||||||||| ||    
T  34392225 atcatgagatccagtccgttacaataaatttaaaatatatcaatgacttatattgaagtggtgtaagttagagcaatatatttggtggtccaaactaaac 34392126  T
Q  289 ttt 291  Q
    |||    
T  34392125 ttt 34392123  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 34480872 - 34480973
Alignment:
Q  189 atcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatac 288  Q
    ||||| |||||| |||||||| ||||||||||  |||||| ||||  ||||||||| |||||||||||||||| |||  ||||||| |||||||||| ||    
T  34480872 atcatgagatccagtccgttagaataaatttaa-atatataaatgacttatattgaagtggtgtaagttggaagaatgtatttgatagtccaaactaaac 34480970  T
Q  289 ttt 291  Q
    |||    
T  34480971 ttt 34480973  T

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Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 147 - 294
Target Start/End: Complemental strand, 42943659 - 42943512
Alignment:
Q  147 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgagg 246  Q
    ||||||||||||||||||||||||   ||||||| |||||| ||||||| ||| ||||||||||||||||||||| |||||| ||||| |||||||||||    
T  42943659 ccaacttacaccactaaaataacaccctgtaacaactttttcatcataaaatctggtccgttaaaataaatttataatatattaatggcttatattgagg 42943560  T
Q  247 tggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 294  Q
    |||||||||||||| || |  ||||| | |||||||||||||||||||    
T  42943559 tggtgtaagttggagcattgtatttggtcgtccaaactatactttgcc 42943512  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 41702884 - 41703023
Alignment:
Q  153 tacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgt 252  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||| |  ||||| ||||||||||| |||| ||||||| |||||||||||||||||    
T  41702884 tacaccactaaaataacaccttgtaacagcttttttatcataagatccagatcgttagaataaatttataatatgtcaatggcttatattgaggtggtgt 41702983  T
Q  253 aagttggaacaataaatttgatggtccaaactatactttg 292  Q
    |||||||||||||  ||||  |||||||||||||||||||    
T  41702984 aagttggaacaatgtatttagtggtccaaactatactttg 41703023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 145 - 294
Target Start/End: Original strand, 4513632 - 4513780
Alignment:
Q  145 ccccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattga 244  Q
    ||||||||||||||||||||||||||  |||||| | |||||  |||||||||||||| |||||| ||||||||||| |||||||||||  |||||||||    
T  4513632 ccccaacttacaccactaaaataacaccttgtaatagcttttc-atcataagatccggaccgttagaataaatttataatatatcaatgacttatattga 4513730  T
Q  245 ggtggtgtaagttggaacaataaatttgatggtccaaactatactttgcc 294  Q
    |||||||||||||||| ||||  ||||| |||| ||||||||||||||||    
T  4513731 ggtggtgtaagttggagcaatgtatttggtggttcaaactatactttgcc 4513780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 23613277 - 23613137
Alignment:
Q  147 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgagg 246  Q
    ||||||||||||| ||||||||||  |||||||| |||||| ||||||||||| |||| |||| |||||||     ||| |||||||  |||||||||||    
T  23613277 ccaacttacaccattaaaataacaccttgtaacaactttttcatcataagatcgggtctgttagaataaata----atacatcaatgacttatattgagg 23613182  T
Q  247 tggtgtaagttggaacaataaatttgatggtccaaactatacttt 291  Q
    |||||||||||||| ||||  ||||| ||||||||||||||||||    
T  23613181 tggtgtaagttggagcaatctatttggtggtccaaactatacttt 23613137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 19504878 - 19505007
Alignment:
Q  162 aaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaa 261  Q
    ||||||||  |||||| || |||||| ||||||||||| | ||||| ||||||||||||  |||||||||||  ||||||| |  ||||||||||||||     
T  19504878 aaaataaccctttgtagcagctttttcatcataagatctgatccgtgaaaataaatttaaaatatatcaatgacttatattaaaatggtgtaagttggag 19504977  T
Q  262 caataaatttgatggtccaaactatacttt 291  Q
    ||||  ||||| ||||  |||||| |||||    
T  19504978 caatgtatttggtggtttaaactaaacttt 19505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 29525622 - 29525541
Alignment:
Q  210 aaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 291  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||| ||||| ||||  |||||||||| |||||||||||||    
T  29525622 aaataaatttatcatatatcaatgatttatattgaggtagtgtaaattggagcaatgtatttgatggttcaaactatacttt 29525541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 29525978 - 29525908
Alignment:
Q  147 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatt 218  Q
    ||||||||||||||||||||||||  |||||||| |||||| ||||||||||| | ||||||||||||||||    
T  29525978 ccaacttacaccactaaaataacaccttgtaaca-ctttttcatcataagatctgatccgttaaaataaatt 29525908  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 4641910 - 4641813
Alignment:
Q  147 ccaacttacaccactaaaataacagtttgtaacatcttttttatcataagatccggtccgttaaaataaatttatgatatatcaatggtttatattga 244  Q
    ||||||||| | | |||||||||   ||||| || |||||| ||||| ||||| | ||||||| ||||||||||  |||||||||||  |||||||||    
T  4641910 ccaacttacgctaataaaataaccccttgtagcagctttttcatcatgagatctgatccgttagaataaatttaaaatatatcaatgacttatattga 4641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 30307994 - 30308078
Alignment:
Q  207 ttaaaataaatttatgatatatcaatggtttatattgaggtggtgtaagttggaacaataaatttgatggtccaaactatacttt 291  Q
    ||||||||||||||  |||||| ||||  |||||||||  | |||||| ||| || |||  |||||||||||||||||| |||||    
T  30307994 ttaaaataaatttaaaatatataaatgacttatattgaaatagtgtaaattgaaataatgtatttgatggtccaaactaaacttt 30308078  T

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