View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17350_high_1 (Length: 651)
Name: NF17350_high_1
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17350_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 89 - 641
Target Start/End: Complemental strand, 7161666 - 7161114
Alignment:
| Q |
89 |
gcatcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161666 |
gcatcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggc |
7161567 |
T |
|
| Q |
189 |
ttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaac |
288 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161566 |
ttccagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaatatcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaac |
7161467 |
T |
|
| Q |
289 |
cacgcgccaccatcttgtctcagataaaaccaaaccctcactcaagtattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttg |
388 |
Q |
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| T |
7161466 |
cacgcgccaccatcttgtctcagataaaaccaaaccctcactcaattattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttg |
7161367 |
T |
|
| Q |
389 |
cagctacagttccctctaaacaatcaaagttgggatcacttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgt |
488 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161366 |
cagctacagttccctctaaacgatcaaagttgggatcgcttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgt |
7161267 |
T |
|
| Q |
489 |
ggaatccttccattcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatgatcatgtaag |
588 |
Q |
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| T |
7161266 |
ggaatccttccattcagaaatttactaaattgccctctttgggctatacagaacgagaggggctttgcagactgtatggctttggctatgatcatgtaag |
7161167 |
T |
|
| Q |
589 |
tgacacttacaaggttgttgttgttgattggtatagtgatgacggttctcatt |
641 |
Q |
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| T |
7161166 |
tgacacttacaaggttgttgttgttgattggtatagtgatgacggttctcatt |
7161114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 7169530 - 7169393
Alignment:
| Q |
167 |
gtggctgaaattctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgcca |
266 |
Q |
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||||| |||||||| ||||||||||||||||| | |||||||||||| |||| ||||| || ||||||||||||||||| || |||||||| ||||| | |
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| T |
7169530 |
gtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgcta |
7169431 |
T |
|
| Q |
267 |
agaaccactttcgcgtttcaaccacgcgccaccatctt |
304 |
Q |
| |
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|||| ||| ||||| | |||||||||| ||||| |||| |
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| T |
7169430 |
agaatcaccttcgcttgtcaaccacgctccaccgtctt |
7169393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 7175163 - 7175055
Alignment:
| Q |
184 |
caggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtt |
283 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| || ||||||| |
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| T |
7175163 |
caggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctcatctcagattcaaatttcaccaagaagaaccttcgcgtg |
7175064 |
T |
|
| Q |
284 |
tcaaccacg |
292 |
Q |
| |
|
||||||||| |
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|
| T |
7175063 |
tcaaccacg |
7175055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 11236913 - 11237045
Alignment:
| Q |
176 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccact |
275 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||| |||| ||||| || |||||||||||||| || || ||| | || ||| ||| || ||| |
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| T |
11236913 |
attctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacacc |
11237012 |
T |
|
| Q |
276 |
ttcgcgtttcaaccacgcgccaccatcttgtct |
308 |
Q |
| |
|
||| ||| || |||||||||| |||||| |||| |
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| T |
11237013 |
ttcacgtgtccaccacgcgcctccatctcgtct |
11237045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 618
Target Start/End: Original strand, 11237232 - 11237370
Alignment:
| Q |
480 |
ctcttgtgtggaatccttccattcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatga |
579 |
Q |
| |
|
||||| ||||||| ||||||||| | |||||||| |||| || ||||||| ||||| ||||||| ||| || || | | ||||| ||||||||||| |
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| T |
11237232 |
ctcttttgtggaacccttccattaagaaatttacgaaatcaccatctttggataatccaaaacgagatgggagttacacaatttatggttttggctatga |
11237331 |
T |
|
| Q |
580 |
tcatgtaagtgacacttacaaggttgttgttgttgattg |
618 |
Q |
| |
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|||||| | ||||| |||||||||||||| |||| |||| |
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|
| T |
11237332 |
tcatgtcaatgacatttacaaggttgttgctgtttattg |
11237370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3626624 - 3626683
Alignment:
| Q |
1 |
ctggatctcttgaatttgaagtatttggccgccaaaaagtacaagtgaagctaatgacat |
60 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3626624 |
ctggatctcttgaatttgaagtatttggccgccaaaaagtacaagtgaagctaatgacat |
3626683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 24722586 - 24722641
Alignment:
| Q |
185 |
aggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatc |
240 |
Q |
| |
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|||||||| ||||| |||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
24722586 |
aggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatc |
24722641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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