View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17350_high_15 (Length: 324)
Name: NF17350_high_15
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17350_high_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 29606455 - 29606749
Alignment:
| Q |
30 |
aaccaatagttccaaaaactacaactccaacatctgctcctttgaaaccaccagttccgaaagctcccgcaccaaaaccttctcctgtgaaaccaccagt |
129 |
Q |
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| T |
29606455 |
aaccaatagttccaaaaactacaactccaacatctgctcctttgaaaccaccagttccgaaagctcccgcaccaaaaccttctcctgtgaaaccaccagt |
29606554 |
T |
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| Q |
130 |
tccaaaatcaaaacctccaacaactgctcctgtcaaatcaccagttccggatcctccaaaactcgctcctgtaaagttgccagtcccaaaggttacaccg |
229 |
Q |
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| T |
29606555 |
tccaaaatcaaaacctccaacaactgctcctgtcaaatcaccagttccggatcctccaaaactcgctcctgtaaagttgccagtcccaaaggttacaccg |
29606654 |
T |
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| Q |
230 |
gcattaagcccaaaaaccccatcccctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatctataccacc |
324 |
Q |
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| T |
29606655 |
gcattaagcccaaaaaccccatcccctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatctataccacc |
29606749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 29606327 - 29606377
Alignment:
| Q |
37 |
agttccaaaaactacaactccaacatctgctcctttgaaaccaccagttcc |
87 |
Q |
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| T |
29606327 |
agttccaaaagctacgactccaacatctgctcctgtgaaaccgccagttcc |
29606377 |
T |
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