View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17350_high_2 (Length: 557)

Name: NF17350_high_2
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17350_high_2
NF17350_high_2
[»] chr3 (25 HSPs)
chr3 (279-508)||(46249299-46249528)
chr3 (282-506)||(14306744-14306968)
chr3 (385-505)||(5789926-5790046)
chr3 (386-505)||(48743897-48744016)
chr3 (391-505)||(40514151-40514265)
chr3 (387-453)||(4963941-4964007)
chr3 (388-494)||(35216357-35216463)
chr3 (388-494)||(47748741-47748847)
chr3 (392-506)||(15275473-15275587)
chr3 (391-505)||(20857537-20857651)
chr3 (393-506)||(19874835-19874948)
chr3 (386-453)||(43171494-43171561)
chr3 (397-456)||(46189102-46189161)
chr3 (399-504)||(31921796-31921901)
chr3 (392-433)||(55366195-55366236)
chr3 (402-482)||(15792755-15792835)
chr3 (389-517)||(31770100-31770228)
chr3 (391-434)||(12041453-12041496)
chr3 (455-505)||(16297541-16297590)
chr3 (392-453)||(13700623-13700684)
chr3 (279-316)||(16297717-16297754)
chr3 (390-431)||(18380638-18380679)
chr3 (399-504)||(31674519-31674624)
chr3 (388-505)||(34828997-34829114)
chr3 (390-431)||(36624332-36624373)
[»] chr7 (19 HSPs)
chr7 (279-514)||(27724540-27724773)
chr7 (1-139)||(7699744-7699881)
chr7 (386-505)||(25944231-25944350)
chr7 (391-505)||(35213214-35213328)
chr7 (391-505)||(38488923-38489037)
chr7 (147-268)||(7700681-7700816)
chr7 (387-513)||(27096719-27096845)
chr7 (387-513)||(27181458-27181584)
chr7 (388-494)||(34103057-34103163)
chr7 (402-489)||(26855305-26855392)
chr7 (388-467)||(30802257-30802336)
chr7 (390-479)||(2686314-2686403)
chr7 (415-479)||(39474492-39474556)
chr7 (399-479)||(43654722-43654802)
chr7 (399-434)||(14746743-14746778)
chr7 (403-506)||(27219564-27219667)
chr7 (389-494)||(8723579-8723684)
chr7 (391-448)||(33822024-33822081)
chr7 (391-436)||(36031662-36031707)
[»] chr4 (19 HSPs)
chr4 (279-461)||(48029119-48029301)
chr4 (279-502)||(53569479-53569701)
chr4 (279-506)||(18443363-18443590)
chr4 (389-506)||(9690001-9690118)
chr4 (387-500)||(52619514-52619627)
chr4 (391-505)||(43517175-43517289)
chr4 (414-489)||(20543689-20543764)
chr4 (392-494)||(41879496-41879598)
chr4 (388-453)||(55261568-55261633)
chr4 (390-479)||(56337969-56338058)
chr4 (392-504)||(27299748-27299860)
chr4 (391-479)||(34104919-34105007)
chr4 (399-479)||(48498524-48498604)
chr4 (399-506)||(24975911-24976018)
chr4 (388-452)||(32348806-32348870)
chr4 (389-453)||(46542568-46542631)
chr4 (400-500)||(52814077-52814177)
chr4 (399-434)||(28732384-28732419)
chr4 (399-456)||(8081675-8081732)
[»] chr2 (16 HSPs)
chr2 (312-514)||(6822918-6823118)
chr2 (389-488)||(31265804-31265903)
chr2 (400-512)||(1159385-1159497)
chr2 (390-477)||(45126374-45126461)
chr2 (409-492)||(8246656-8246738)
chr2 (400-487)||(37308408-37308495)
chr2 (402-448)||(144526-144572)
chr2 (388-506)||(18634543-18634661)
chr2 (392-434)||(34833078-34833120)
chr2 (388-437)||(7300256-7300305)
chr2 (402-455)||(32623952-32624004)
chr2 (399-434)||(3704318-3704353)
chr2 (399-504)||(17689587-17689692)
chr2 (389-434)||(33570936-33570981)
chr2 (385-434)||(39072713-39072762)
chr2 (389-489)||(44941275-44941375)
[»] chr5 (14 HSPs)
chr5 (279-505)||(14055084-14055311)
chr5 (393-506)||(26904563-26904676)
chr5 (386-506)||(13735332-13735452)
chr5 (388-494)||(379491-379597)
chr5 (388-505)||(5909508-5909625)
chr5 (399-494)||(979543-979638)
chr5 (402-489)||(5100098-5100185)
chr5 (388-494)||(27679653-27679759)
chr5 (388-489)||(22179440-22179541)
chr5 (295-338)||(10032827-10032870)
chr5 (405-448)||(21368418-21368461)
chr5 (388-454)||(18718444-18718510)
chr5 (399-504)||(475802-475907)
chr5 (418-478)||(35636922-35636982)
[»] chr8 (10 HSPs)
chr8 (388-494)||(15438747-15438853)
chr8 (388-494)||(15530051-15530157)
chr8 (392-506)||(35183193-35183307)
chr8 (392-506)||(36698869-36698983)
chr8 (399-488)||(6985200-6985289)
chr8 (388-504)||(9510374-9510490)
chr8 (399-453)||(12340158-12340212)
chr8 (388-453)||(6244727-6244792)
chr8 (399-434)||(29722409-29722444)
chr8 (392-454)||(42240384-42240446)
[»] chr1 (13 HSPs)
chr1 (391-494)||(13868271-13868374)
chr1 (391-505)||(45795012-45795126)
chr1 (418-476)||(23765777-23765835)
chr1 (393-506)||(28357474-28357587)
chr1 (402-448)||(52028276-52028322)
chr1 (400-500)||(5287589-5287689)
chr1 (399-443)||(22565649-22565693)
chr1 (399-437)||(38204380-38204418)
chr1 (389-506)||(18959767-18959884)
chr1 (385-434)||(26701222-26701271)
chr1 (399-504)||(34824924-34825029)
chr1 (399-504)||(49458319-49458424)
chr1 (399-479)||(48380422-48380502)
[»] chr6 (15 HSPs)
chr6 (396-505)||(14320566-14320675)
chr6 (388-517)||(31706349-31706478)
chr6 (388-494)||(6936970-6937076)
chr6 (389-506)||(14497719-14497836)
chr6 (413-506)||(19349548-19349641)
chr6 (418-505)||(32185293-32185380)
chr6 (390-508)||(2710156-2710274)
chr6 (393-506)||(29977459-29977572)
chr6 (402-489)||(14687469-14687555)
chr6 (399-434)||(32362657-32362692)
chr6 (399-453)||(8385142-8385196)
chr6 (415-453)||(33095576-33095614)
chr6 (399-504)||(2364694-2364799)
chr6 (390-431)||(17252514-17252555)
chr6 (388-448)||(14620640-14620700)
[»] scaffold0057 (1 HSPs)
scaffold0057 (388-479)||(3404-3495)
[»] scaffold0027 (1 HSPs)
scaffold0027 (392-506)||(139378-139492)
[»] scaffold0048 (2 HSPs)
scaffold0048 (402-494)||(64205-64297)
scaffold0048 (402-494)||(50910-51002)
[»] scaffold0321 (1 HSPs)
scaffold0321 (392-487)||(17637-17732)
[»] scaffold0314 (1 HSPs)
scaffold0314 (387-428)||(18384-18425)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 279 - 508
Target Start/End: Complemental strand, 46249528 - 46249299
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatga 378  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||   |||||||||||||||||| | ||    ||||||||||||||||||||||||    
T  46249528 aagaaatcaaaatgatatatattaacagcggcaatgaaaatttctcaatacaagatgtactagagaactcaccctcaacaagaattgtttaacaaaatga 46249429  T
Q  379 tcatagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacc 478  Q
      |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  46249428 gtacggtaaaaaggtcagtcgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccacc 46249329  T
Q  479 ataacgaatgatattttgctttttctaaca 508  Q
    ||||||||||||||||||||||||||||||    
T  46249328 ataacgaatgatattttgctttttctaaca 46249299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 282 - 506
Target Start/End: Original strand, 14306744 - 14306968
Alignment:
Q  282 aaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatgatca 381  Q
    |||||||||| ||||||||||| |||||| ||| ||||||||  | |||||||||||||||||| | ||  |||| ||||| ||||||||||| | || |    
T  14306744 aaatcaaaatggtatatattaaaagcggcaatgtaaatttcttagtacaagatgtactagagaactcaccccgaaaaagaactgtttaacaaagtaatta 14306843  T
Q  382 tagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccata 481  Q
    | |||||||||||||| |||||||||||||| |||||||| |||||||||||| || ||||| |||||||||||| |||||||||| ||||||||||| |    
T  14306844 tggtaaaaaggtcagtcgatacccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaaattgatgttattagcttttaaccaccaaa 14306943  T
Q  482 acgaatgatattttgctttttctaa 506  Q
    || ||||||||||||||||||||||    
T  14306944 acaaatgatattttgctttttctaa 14306968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 5790046 - 5789926
Alignment:
Q  385 taaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacg 484  Q
    |||||||||||||  ||||||| |||||||||||||||| |||||||||| |  || || ||||||||| ||||||||||||| ||||||||||| |||     
T  5790046 taaaaaggtcagtcaatacccagacaaagtaaagggtccaaccaccatctctcagagccgtacacaaaagtggtgttattagcttttaaccaccaaaaca 5789947  T
Q  485 aatgatattttgctttttcta 505  Q
    ||||| |||||||||||||||    
T  5789946 aatgaaattttgctttttcta 5789926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 48744016 - 48743897
Alignment:
Q  386 aaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacga 485  Q
    |||||||||||| |||| |||  |||||||||||||||||||||||||| || ||  | ||||||||| || |||||||||| ||||| ||||| |||||    
T  48744016 aaaaaggtcagtcgataaccaggcaaagtaaagggtccgaccaccatctctgagagtcgtacacaaaagtgttgttattagcatttaaacaccaaaacga 48743917  T
Q  486 atgatattttgctttttcta 505  Q
    |||| |||||||||||||||    
T  48743916 atgaaattttgctttttcta 48743897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 391 - 505
Target Start/End: Complemental strand, 40514265 - 40514151
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    |||| ||||||||||||||| | ||||||||||||||||||| |||| ||||| |||| ||| ||||  ||||||||||||| |||||| || || ||||    
T  40514265 ggtcggttgatacccaaacataataaagggtccgaccaccatttttgtgaaccgtacataaagttggccttattagcctttagccaccacaaagagtgat 40514166  T
Q  491 attttgctttttcta 505  Q
    ||||  |||||||||    
T  40514165 atttaactttttcta 40514151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 4963941 - 4964007
Alignment:
Q  387 aaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| || ||||| |||||||||    
T  4963941 aaaaggtcagtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaa 4964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 494
Target Start/End: Complemental strand, 35216463 - 35216357
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| ||||||||||||| | | ||||||| |||||||||| || | ||| ||||||||||||| ||| |||||||| | |||||||||| |||    
T  35216463 aaaggtcagtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaaattggcgttcttagccttaagccaccataacaaat 35216364  T
Q  488 gatattt 494  Q
    || ||||    
T  35216363 gaaattt 35216357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 47748741 - 47748847
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    ||||||||||||| |||||||||| ||| ||||| ||||||||| ||||| ||||| ||||||||| |||| ||||| || || | |||||| |||||||    
T  47748741 aaaggtcagttgaaacccaaacaatgtagagggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaat 47748840  T
Q  488 gatattt 494  Q
    || ||||    
T  47748841 gaaattt 47748847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 506
Target Start/End: Original strand, 15275473 - 15275587
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgata 491  Q
    |||||| ||||||||||||   ||||||||||||| ||||  | || ||||||||||||||  | || |||| || ||||| ||||||||| ||||||||    
T  15275473 gtcagtcgatacccaaacactataaagggtccgactaccaattatgagaaccatacacaaacatagtattatgagtctttagccaccataaagaatgata 15275572  T
Q  492 ttttgctttttctaa 506  Q
    |||||| ||||||||    
T  15275573 ttttgccttttctaa 15275587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 505
Target Start/End: Original strand, 20857537 - 20857651
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    |||| ||||||||||||| | | |||||||||||||||||||||||| | ||| |||| ||||||||  ||||||||||| | |||||| || || || |    
T  20857537 ggtcggttgatacccaaatataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagccttgagccaccacaaagagtggt 20857636  T
Q  491 attttgctttttcta 505  Q
    ||||  |||||||||    
T  20857637 atttaactttttcta 20857651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 19874835 - 19874948
Alignment:
Q  393 tcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatat 492  Q
    ||||| ||| ||||||||  ||||||||||||| |||||  | || ||||||||||||||  | || |||| |||||||| ||||||||| |||||||||    
T  19874835 tcagtcgattcccaaacactgtaaagggtccgaacaccaattatgagaaccatacacaaacatagtattatgagcctttagccaccataaagaatgatat 19874934  T
Q  493 tttgctttttctaa 506  Q
    ||| | ||||||||    
T  19874935 tttaccttttctaa 19874948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 43171561 - 43171494
Alignment:
Q  386 aaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    |||||||||||  ||||||||| |||||||| || |||||||||||||| || || ||||||||||||    
T  43171561 aaaaaggtcagccgatacccaagcaaagtaacggatccgaccaccatctctgagagccatacacaaaa 43171494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 456
Target Start/End: Original strand, 46189102 - 46189161
Alignment:
Q  397 ttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattg 456  Q
    |||||||||||| |||| || || ||||||||||||||||| |||||||| |||||||||    
T  46189102 ttgatacccaaataaagcaagggatccgaccaccatctttgagaaccataaacaaaattg 46189161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 31921901 - 31921796
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    ||||||||||||||| | ||||| ||||||||| || ||  |||| |||||||| ||||  ||| |||| |||| ||||||||| |||||  ||||| ||    
T  31921901 gatacccaaacaaagcatagggttcgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccaccataaagaatgtaattttact 31921802  T
Q  499 ttttct 504  Q
    ||||||    
T  31921801 ttttct 31921796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 55366195 - 55366236
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatc 433  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  55366195 gtcagtcgatacccaaacaaagtaacgggtccgaccaccatc 55366236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 482
Target Start/End: Original strand, 15792755 - 15792835
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataa 482  Q
    ||||||||||| ||| |||||| |||||||||| || ||||| ||||||||| | |  ||||||||||| | |||||||||    
T  15792755 acccaaacaaactaaggggtccaaccaccatctctgagaaccgtacacaaaagtagcattattagccttaagccaccataa 15792835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 517
Target Start/End: Complemental strand, 31770228 - 31770100
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    ||||||||| || ||||||||| |  | |||||||||||||||||| || |   ||||||||||  | ||||| ||||| |||| |||||| || |||||    
T  31770228 aaggtcagtcgaaacccaaacacaacatagggtccgaccaccatctctgagtgtcatacacaaacgtagtgtttttagcttttagccaccacaaagaatg 31770129  T
Q  489 atattttgctttttctaacaactgtaaaa 517  Q
    | ||||| |||| ||||| | ||||||||    
T  31770128 aaattttactttatctaaaagctgtaaaa 31770100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 12041496 - 12041453
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    ||||||||||||||||||||||  |||||||| |||||||||||    
T  12041496 ggtcagttgatacccaaacaaaccaaagggtctgaccaccatct 12041453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 505
Target Start/End: Complemental strand, 16297590 - 16297541
Alignment:
Q  455 tggtgttattagcctttaaccaccataacgaatgatattttgctttttcta 505  Q
    ||||||||||||| |||| |||||| ||||||||| |||||||||||||||    
T  16297590 tggtgttattagctttta-ccaccaaaacgaatgaaattttgctttttcta 16297541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 13700684 - 13700623
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    |||||| |||||||||||||  |||||||| ||||||||| ||||| ||| | |||||||||    
T  13700684 gtcagtcgatacccaaacaatataaagggttcgaccaccaactttgagaaacgtacacaaaa 13700623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 16297754 - 16297717
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaa 316  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  16297754 aagaaatcaaaatggaatatattaacagcggcgatgaa 16297717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 18380638 - 18380679
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccacca 431  Q
    ||||||||||||||||||||| ||||| |||| |||||||||    
T  18380638 aggtcagttgatacccaaacacagtaacgggttcgaccacca 18380679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 31674519 - 31674624
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    ||||||||||||||| | || |||||||||||| || ||  |||| |||||||| ||||  ||| |||| |||| |||||||||  ||||  ||||| ||    
T  31674519 gatacccaaacaaagcatagagtccgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccaccataaacaatgtaattttact 31674618  T
Q  499 ttttct 504  Q
    ||||||    
T  31674619 ttttct 31674624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 505
Target Start/End: Original strand, 34828997 - 34829114
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||| | ||||| |||||| | |||||||| ||||||||||||||| ||| | |||| |||| |||  |||||||| || | |||||| || || |    
T  34828997 aaaggtcaatcgatactcaaacataataaagggttcgaccaccatctttgagaatcgtacataaaagtggccttattagctttaagccaccaaaaggagt 34829096  T
Q  488 gatattttgctttttcta 505  Q
    || ||||  |||||||||    
T  34829097 gaaatttaactttttcta 34829114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 36624373 - 36624332
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccacca 431  Q
    |||||||| ||||||||||||||||||  |||||||||||||    
T  36624373 aggtcagtcgatacccaaacaaagtaacaggtccgaccacca 36624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 279 - 514
Target Start/End: Complemental strand, 27724773 - 27724540
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatga 378  Q
    ||||||||||||| | ||||||||||||||||| ||||||  |||| | |||||||||||||||||  | ||  |||| ||||| |||||| ||| || |    
T  27724773 aagaaatcaaaatggaatatattaacagcggcggtgaaaaaatctccgtacaagatgtactagagagttcaccccgaaaaagaaatgttta-caacataa 27724675  T
Q  379 tcatagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacc 478  Q
      | ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||    
T  27724674 gtacagtaaaaag-tcagtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaaccgtacataaaattggtgttactagcttttaaccacc 27724576  T
Q  479 ataacgaatgatattttgctttttctaacaactgta 514  Q
    |||||||||||||||||||||||||||||| |||||    
T  27724575 ataacgaatgatattttgctttttctaacatctgta 27724540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 7699744 - 7699881
Alignment:
Q  1 aagtcttcatcttaatcttggagttttctttaagttgnnnnnnntaagaagaggtggtttgagtttgggttgagacttgagtgagtactcaagtttaggt 100  Q
    |||||||||||||||| ||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  7699744 aagtcttcatcttaattttggagttttccttaagtt-taataaataagaagaggtggtttgagtttgggttgagacttgagtgtgtactcacgtttgggt 7699842  T
Q  101 gacaagatagattttcagagtgtggctatttatagaatt 139  Q
    ||||||| |||||||||||||||  ||||||||||||||    
T  7699843 gacaagaaagattttcagagtgtacctatttatagaatt 7699881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 25944350 - 25944231
Alignment:
Q  386 aaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacga 485  Q
    ||||||||||||| ||||||| ||||||||||| ||| |||| |||||  || || || ||||||||| ||||||||||||| |||||| |||| |||||    
T  25944350 aaaaaggtcagttcatacccagacaaagtaaagagtctgacctccatccctgagatccgtacacaaaagtggtgttattagcttttaactaccaaaacga 25944251  T
Q  486 atgatattttgctttttcta 505  Q
    |||| |||||||||||||||    
T  25944250 atgaaattttgctttttcta 25944231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 391 - 505
Target Start/End: Original strand, 35213214 - 35213328
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    |||| |||||||||| |||| | ||||| |||||||||||||||||| | ||| |||| ||||||||  |||||||||||||||||||| || || ||||    
T  35213214 ggtcggttgatacccgaacataataaagcgtccgaccaccatctttgtgtaccgtacataaaattggccttattagcctttaaccaccacaaagagtgat 35213313  T
Q  491 attttgctttttcta 505  Q
    ||||  |||||||||    
T  35213314 atttaactttttcta 35213328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 391 - 505
Target Start/End: Complemental strand, 38489037 - 38488923
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    ||||||| ||||| |||||| | ||||||||| |||||||||||||| | ||| |||| ||| ||||| |||||||||||||||||||| || || ||||    
T  38489037 ggtcagtcgatactcaaacataataaagggtctgaccaccatctttgtgtaccgtacataaagttggtcttattagcctttaaccaccacaaagagtgat 38488938  T
Q  491 attttgctttttcta 505  Q
    ||||  |||||||||    
T  38488937 atttaactttttcta 38488923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 7700681 - 7700816
Alignment:
Q  147 atccggatgtataattgttttagtaaaagaggctataatatatttttcgtttt--------aaaaaaggaaaatgaaaagcggctataataatgaaaa-- 236  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||        |||||| ||||| |||||  ||| ||||||||||| |      
T  7700681 atccgaatgtatagttgttttagtaaaagtggctataatatatttttcgttttcaaaaaaaaaaaaaagaaaaggaaaaaaggcaataataatgaatatg 7700780  T
Q  237 ----acgaccctttgagatatctatgatattatttt 268  Q
        | ||||||||||||||||||||||||||||||    
T  7700781 agttatgaccctttgagatatctatgatattatttt 7700816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 513
Target Start/End: Original strand, 27096719 - 27096845
Alignment:
Q  387 aaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaa 486  Q
    |||| ||||||  ||||||||||||  |||||||| ||||||||| ||||| ||||| ||||||||| |||| || || || || | |||||| ||||||    
T  27096719 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaa 27096818  T
Q  487 tgatattttgctttttctaacaactgt 513  Q
    ||| ||||  |||| ||||||||||||    
T  27096819 tgaaatttaactttatctaacaactgt 27096845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 513
Target Start/End: Complemental strand, 27181584 - 27181458
Alignment:
Q  387 aaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaa 486  Q
    |||| ||||||  ||||||||||||  |||||||| ||||||||| ||||| ||||| ||||||||| |||| || || || || | |||||| ||||||    
T  27181584 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaa 27181485  T
Q  487 tgatattttgctttttctaacaactgt 513  Q
    ||| ||||  |||| ||||||||||||    
T  27181484 tgaaatttaactttatctaacaactgt 27181458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 34103057 - 34103163
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||| || || ||  ||||||||||||  ||||| || || | ||| || |||||||    
T  34103057 aaaggtcagtcgatacccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggctttaagccatcaaaacgaat 34103156  T
Q  488 gatattt 494  Q
    || ||||    
T  34103157 gaaattt 34103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 489
Target Start/End: Original strand, 26855305 - 26855392
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatga 489  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||  ||||| | ||| ||||| |  | ||||||||| ||||||    
T  26855305 acccaaacaaaataaagggtccgaccaccatcgttgggtaccatacatgaaatttgcgttgttagcttgaagccaccataaagaatga 26855392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 467
Target Start/End: Complemental strand, 30802336 - 30802257
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagc 467  Q
    |||||| ||| ||||||||||||||  |||||||||||||||| ||| || ||||| ||||||||  ||| |||||||||    
T  30802336 aaaggttagtcgatacccaaacaaatcaaagggtccgaccaccgtctctgagaaccgtacacaaacgtggcgttattagc 30802257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 479
Target Start/End: Complemental strand, 2686403 - 2686314
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    |||||||| |||||||| |||  |||| |||||||||| ||||||||| | |||| | |||||| |||  ||||||||||||| ||||||    
T  2686403 aggtcagtcgatacccagacactgtaacgggtccgaccgccatctttgagtaccaaatacaaaagtggcattattagcctttagccacca 2686314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 39474556 - 39474492
Alignment:
Q  415 aaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    |||||||||||||||||||| || |||||||| | ||||  ||||||||| ||||| ||||||||    
T  39474556 aaagggtccgaccaccatctctgagaaccatatataaaagaggtgttattcgccttcaaccacca 39474492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 479
Target Start/End: Original strand, 43654722 - 43654802
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    ||||||||||||   ||| ||||||||||||||||| ||   ||||||||||||| ||||| ||| |||||| ||||||||    
T  43654722 gatacccaaacattttaaggggtccgaccaccatctctgactaccatacacaaaaatggtgctatgagccttcaaccacca 43654802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Original strand, 14746743 - 14746778
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||||||||||||||||| |||||||||||||||||    
T  14746743 gatacccaaacaaagtaacgggtccgaccaccatct 14746778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 27219667 - 27219564
Alignment:
Q  403 cccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgcttttt 502  Q
    ||||||||  ||| ||| |||||||||||  | || ||||||||||||||  | || ||||  ||||||| ||||||||| |||||||||||| | ||||    
T  27219667 cccaaacactgtataggatccgaccaccaaatatgagaaccatacacaaacatagtattatgggcctttagccaccataaggaatgatattttacctttt 27219568  T
Q  503 ctaa 506  Q
    ||||    
T  27219567 ctaa 27219564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 494
Target Start/End: Complemental strand, 8723684 - 8723579
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    ||||||||| |||||| | ||||  |||||||| |||||| ||  | || | ||| ||||||||| |||| ||||| | |||||||||||| || |||||    
T  8723684 aaggtcagtcgatacctagacaagataaagggttcgaccaacaattctgaggaccgtacacaaaagtggttttattggactttaaccaccacaaagaatg 8723585  T
Q  489 atattt 494  Q
    ||||||    
T  8723584 atattt 8723579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 33822081 - 33822024
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccataca 448  Q
    ||||||| ||||||||||||||  |||||||||||| ||||||| || ||||| ||||    
T  33822081 ggtcagtcgatacccaaacaaatcaaagggtccgactaccatctatgagaaccgtaca 33822024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 36031662 - 36031707
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatcttt 436  Q
    |||| ||||| ||||||||| | |||||||||||||||||||||||    
T  36031662 ggtcggttgaaacccaaacataataaagggtccgaccaccatcttt 36031707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 9e-56; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 279 - 461
Target Start/End: Original strand, 48029119 - 48029301
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatga 378  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||| | ||||||||||  |||||| | ||  ||||||||||||||||||||||||||    
T  48029119 aagaaatcaaaatgatatatattaacagcggcgatgaaaaattctcagtacaagatgtatcagagaattcaccccgaacaagaattgtttaacaaaatga 48029218  T
Q  379 tcatagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgtt 461  Q
    | | ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  48029219 ttacagtaaaaaggtcagttgatacccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaaattggtgtt 48029301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 279 - 502
Target Start/End: Original strand, 53569479 - 53569701
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatga 378  Q
    ||||||||||||| |||||||||| ||| ||||||| ||||| ||| | ||||||||||  |||||| | |  ||||| |||||  |||||||||| | |    
T  53569479 aagaaatcaaaatggtatatattatcagtggcgatgtaaatt-ctcagtacaagatgtatcagagaattcatctcgaaaaagaaccgtttaacaaagtaa 53569577  T
Q  379 tcatagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacc 478  Q
    | | |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||| | ||||| ||||    
T  53569578 ttacagtaaaaatgtcagttgatacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaattgatgttattaacttttaatcacc 53569677  T
Q  479 ataacgaatgatattttgcttttt 502  Q
    | ||||||||||||||||||||||    
T  53569678 aaaacgaatgatattttgcttttt 53569701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 279 - 506
Target Start/End: Complemental strand, 18443590 - 18443363
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatga 378  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||||| ||||||   ||  |||| || || ||||||||||| | |    
T  18443590 aagaaatcaaaatggtatatattcacagcggcgatgaaaattcctcagtacaagatgtaccagagaaaccaccccgaaaaacaactgtttaacaaagtaa 18443491  T
Q  379 tcatagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacc 478  Q
    | |  |||| ||||||||| ||||| ||||||||||||||||| |||||||||| | || ||||  ||||||||| ||||||||| | | ||||||||||    
T  18443490 ttacggtaacaaggtcagtcgatactcaaacaaagtaaagggttcgaccaccatttctgagaactgtacacaaaagtggtgttatcaacttttaaccacc 18443391  T
Q  479 ataacgaatgatattttgctttttctaa 506  Q
    | ||||||||| ||||||||||||||||    
T  18443390 aaaacgaatgaaattttgctttttctaa 18443363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 389 - 506
Target Start/End: Original strand, 9690001 - 9690118
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    |||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    | |||| ||| |||| |||||| ||||||||    
T  9690001 aaggtcggtcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccatacacaaaagaaatattatgagcttttagccaccagaacgaatg 9690100  T
Q  489 atattttgctttttctaa 506  Q
      ||||| ||||||||||    
T  9690101 tgatttttctttttctaa 9690118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 500
Target Start/End: Complemental strand, 52619627 - 52619514
Alignment:
Q  387 aaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaa 486  Q
    ||||||||||| ||||||||||||  | |||||||||||||||||||| || || |  ||||||||||||||||| || || |||| |||||| | ||||    
T  52619627 aaaaggtcagtcgatacccaaacactgaaaagggtccgaccaccatctctgagagctgtacacaaaattggtgtttttggcttttagccaccaaagcgaa 52619528  T
Q  487 tgatattttgcttt 500  Q
    ||| |||| |||||    
T  52619527 tgaaatttagcttt 52619514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 505
Target Start/End: Complemental strand, 43517289 - 43517175
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    |||| ||||||||||||||| | ||||||||  |||||||||||||| | ||| ||||  |||||||  ||||||||||||| |||||| || || ||||    
T  43517289 ggtcggttgatacccaaacataataaagggtatgaccaccatctttgtgtaccgtacatcaaattggccttattagcctttagccaccacaaagagtgat 43517190  T
Q  491 attttgctttttcta 505  Q
    ||||  |||||||||    
T  43517189 atttaactttttcta 43517175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 20543689 - 20543764
Alignment:
Q  414 taaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatga 489  Q
    |||||||||||||||||||||||||| |||||||| ||||||||  || ||||| || | ||||||||| ||||||    
T  20543689 taaagggtccgaccaccatctttgggtaccatacataaaattggctttgttagctttaagccaccataaagaatga 20543764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 494
Target Start/End: Complemental strand, 41879598 - 41879496
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgata 491  Q
    |||||| |||||| | |||||||||||||| |||||||||  |||| ||||| |||| |||| |||| |||||||| ||||| ||||| ||||| ||| |    
T  41879598 gtcagtcgatacctagacaaagtaaagggttcgaccaccagttttgagaaccgtacataaaagtggttttattagcttttaatcaccacaacgagtgaaa 41879499  T
Q  492 ttt 494  Q
    |||    
T  41879498 ttt 41879496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 55261568 - 55261633
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    |||||||||| ||||||||  |||||||| |||||| |||||||||| || |||||||||||||||    
T  55261568 aaaggtcagtcgatacccagtcaaagtaacgggtccaaccaccatctctgagaaccatacacaaaa 55261633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 479
Target Start/End: Complemental strand, 56338058 - 56337969
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    |||||||| ||||||||||||||| ||  ||||| ||||||||||||| |||||||| |||||| |||  || ||||| |||| ||||||    
T  56338058 aggtcagtcgatacccaaacaaagcaaccggtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccacca 56337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 504
Target Start/End: Original strand, 27299748 - 27299860
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgata 491  Q
    ||||||||||||||||||| | |||||||||| |||||||||| || | ||| | ||||||| |||| |||||||| || | |||||| || || ||| |    
T  27299748 gtcagttgatacccaaacataataaagggtccaaccaccatctgtgagtaccgtgcacaaaagtggtcttattagctttaagccaccaaaaagagtgaaa 27299847  T
Q  492 ttttgctttttct 504  Q
     ||| ||||||||    
T  27299848 ctttactttttct 27299860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 479
Target Start/End: Original strand, 34104919 - 34105007
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    ||||||| |||||||||||| |  |||||||||||||||||||| || |||||||| ||||||  ||  ||||| ||||| ||||||||    
T  34104919 ggtcagtcgatacccaaacataacaaagggtccgaccaccatctctgagaaccatatacaaaacaggcattattcgccttcaaccacca 34105007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 479
Target Start/End: Complemental strand, 48498604 - 48498524
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    ||||||||| |||  ||| ||||||||||||||||| || | ||||||||||||| ||||| ||| |||||| ||||||||    
T  48498604 gatacccaagcaagctaacgggtccgaccaccatctctgagtaccatacacaaaaatggtgctatgagccttcaaccacca 48498524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 506
Target Start/End: Complemental strand, 24976018 - 24975911
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    |||||| ||||||| ||| || ||||||||||| |||||  |||| || ||||||   ||||||| ||| |||||||||||||| || ||| |||||||     
T  24976018 gatacctaaacaaaataagggatccgaccaccacctttgataaccttaaacaaaaacagtgttatgagcttttaaccaccataaggagtgaaattttgcc 24975919  T
Q  499 ttttctaa 506  Q
    ||||||||    
T  24975918 ttttctaa 24975911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 32348870 - 32348806
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaa 452  Q
    |||||| ||| ||||||||||||||  ||||| |||||||||||||| || ||||| ||||||||    
T  32348870 aaaggttagtcgatacccaaacaaatcaaaggatccgaccaccatctctgagaaccgtacacaaa 32348806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 46542568 - 46542631
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    ||||||| | |||||||||||||| |||||||||||| || |||||||| |||||||| ||||||    
T  46542568 aaggtcaatcgatacccaaacaaattaaagggtccga-caacatctttgagaaccatatacaaaa 46542631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 500
Target Start/End: Original strand, 52814077 - 52814177
Alignment:
Q  400 atacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgctt 499  Q
    ||||||||||||  |||||||| ||||||||| ||||| ||||| ||||||||| || | || || || || | |||||| ||||||||| ||||| |||    
T  52814077 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaattttactt 52814176  T
Q  500 t 500  Q
    |    
T  52814177 t 52814177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 28732419 - 28732384
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||||||||||||||||| |||||||||||||||||    
T  28732419 gatacccaaacaaagtaacgggtccgaccaccatct 28732384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 456
Target Start/End: Original strand, 8081675 - 8081732
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattg 456  Q
    ||||| |||||||||||| ||||||||||||||||| || |  ||||| |||||||||    
T  8081675 gatactcaaacaaagtaatgggtccgaccaccatctatgagtgccataaacaaaattg 8081732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 312 - 514
Target Start/End: Original strand, 6822918 - 6823118
Alignment:
Q  312 atgaaaatttctcggcacaagatgtactagagaagttacatcgaacaagaattgtttaacaaaatgatcatagtaaaaaggtcagttgatacccaaacaa 411  Q
    ||||||| ||||| | |||||||||||||||||  | ||  |||| ||||| |||||| ||||||||| | ||||||| ||||| | |||||||||||||    
T  6822918 atgaaaaattctcagtacaagatgtactagagagctcaccccgaataagaaatgttta-caaaatgattacagtaaaa-ggtcaatcgatacccaaacaa 6823015  T
Q  412 agtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgctttttctaacaact 511  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  6823016 agtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaatgatattttgctttttctaacagct 6823115  T
Q  512 gta 514  Q
    |||    
T  6823116 gta 6823118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 31265804 - 31265903
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||| ||| |||| |||| | ||||||||    
T  31265804 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgagaatcatacacaaaagtggtattatgagcttttagccactaaaacgaatg 31265903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 512
Target Start/End: Complemental strand, 1159497 - 1159385
Alignment:
Q  400 atacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgctt 499  Q
    ||||||||||||  |||||||| |||||||||  |||| ||||| ||||||||| |||| || ||||| || | |||||| ||||||||| ||||  |||    
T  1159497 atacccaaacaatataaagggttcgaccaccaattttgagaaccgtacacaaaagtggtttttttagctttaagccaccacaacgaatgaaatttaactt 1159398  T
Q  500 tttctaacaactg 512  Q
    | |||||||||||    
T  1159397 tatctaacaactg 1159385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 45126374 - 45126461
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccac 477  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||| || ||||| |||| ||||  |||||| || || |||||||||    
T  45126374 aggtcagtcgatacccaaataaagtaaagggtctgaccaccatctctgagaaccgtacataaaagcggtgttttttgcttttaaccac 45126461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 8246738 - 8246656
Alignment:
Q  409 caaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatat 492  Q
    |||||||||||||||||||| ||| |||| ||| |||||||||||||||| |||||||| || | |||||| || || ||||||    
T  8246738 caaagtaaagggtccgaccatcat-tttgagaatcatacacaaaattggtcttattagctttcagccaccaaaatgagtgatat 8246656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 487
Target Start/End: Complemental strand, 37308495 - 37308408
Alignment:
Q  400 atacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    ||||||| |||||| ||| | |||||| ||||||| || ||||| ||||||||  ||| ||||||||| ||||||||||| |||||||    
T  37308495 atacccatacaaagcaaatgatccgactaccatctctgagaaccgtacacaaacgtggcgttattagcttttaaccaccaaaacgaat 37308408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 144572 - 144526
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccataca 448  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  144572 acccaaacaaaataaagggtccgaccaccatcgttgggtaccataca 144526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 506
Target Start/End: Original strand, 18634543 - 18634661
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    ||||||| ||||||  ||||||| |  |||||||||||||||||||| || || |||||||||||  |||| |||||||| || |  ||||| ||| |||    
T  18634543 aaaggtcggttgatgtccaaacataacaaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaat 18634642  T
Q  488 gatattttgctttttctaa 506  Q
    || ||||  ||||||||||    
T  18634643 gaaatttaactttttctaa 18634661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 34833120 - 34833078
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  34833120 gtcagtcgatacccaaacaaagtaacgggtccgaccaccatct 34833078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 7300256 - 7300305
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttg 437  Q
    |||||||||| |||||||||||| |  |||||||||||||||||||||||    
T  7300256 aaaggtcagtcgatacccaaacataacaaagggtccgaccaccatctttg 7300305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 32623952 - 32624004
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaatt 455  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||    
T  32623952 acccaaacaaaataaagggtccgaccaccat-tttgggtaccatacataaaatt 32624004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Original strand, 3704318 - 3704353
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||||||||||||||||| |||||||||||||||||    
T  3704318 gatacccaaacaaagtaacgggtccgaccaccatct 3704353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 17689587 - 17689692
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    |||||| |||||||| | ||| ||||||||||| ||||| ||||| ||||||||  |||  ||| |||| |||| ||||||||| || ||  ||||| ||    
T  17689587 gatacctaaacaaagcataggatccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttact 17689686  T
Q  499 ttttct 504  Q
    ||||||    
T  17689687 ttttct 17689692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 33570936 - 33570981
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    ||||||||| |||||||||||||||||||||||  ||| |||||||    
T  33570936 aaggtcagtcgatacccaaacaaagtaaagggtttgacaaccatct 33570981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 39072713 - 39072762
Alignment:
Q  385 taaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||| |||||||| |||| ||||||||||||| ||||||||| |||||||    
T  39072713 taaacaggtcagtcgatatccaaacaaagtaacgggtccgactaccatct 39072762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 44941375 - 44941275
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    ||||| ||||||||| |||||| |  ||||| |||||||||||||| || ||||| ||||||||  ||   || ||||| |||| |||||| ||||||||    
T  44941375 aaggttagttgatactcaaacacatcaaaggatccgaccaccatctctgtgaaccgtacacaaatgtgacattgttagcttttagccaccaaaacgaatg 44941276  T
Q  489 a 489  Q
    |    
T  44941275 a 44941275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 279 - 505
Target Start/End: Complemental strand, 14055311 - 14055084
Alignment:
Q  279 aagaaatcaaaatcgtatatattaacagcggcgatgaaaatttctcggca---caagatgtactagagaagttacatcgaacaagaattgtttaacaaaa 375  Q
    |||| |||||||| ||||||||||||||||||| ||| |||||||  | |   |||||||||  |||||| | ||   ||| ||||| |||||||||||     
T  14055311 aagagatcaaaatggtatatattaacagcggcggtgataatttcttagaagtacaagatgtatcagagaactcaccctgaaaaagaactgtttaacaaag 14055212  T
Q  376 tgatcatagtaaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaacc 475  Q
    | || | |   ||||||||| |  ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| | || ||||    
T  14055211 taattacat--aaaaggtcaatcaatacccaaacaaaataaagggtccggccaccatctttgagaaccatacacaaaattggtgttattatctttcaacc 14055114  T
Q  476 accataacgaatgatattttgctttttcta 505  Q
    |||| |||||||||||||||||||||||||    
T  14055113 accaaaacgaatgatattttgctttttcta 14055084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 393 - 506
Target Start/End: Complemental strand, 26904676 - 26904563
Alignment:
Q  393 tcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatat 492  Q
    ||||| ||||||||||||| ||||| ||||||||||||| || || ||||||||||||||  ||||||||| |||||||| ||| ||||| |||||||||    
T  26904676 tcagtcgatacccaaacaatgtaaatggtccgaccaccaactctgagaaccatacacaaacatggtgttatgagcctttagccaacataaagaatgatat 26904577  T
Q  493 tttgctttttctaa 506  Q
    ||||| ||||||||    
T  26904576 tttgccttttctaa 26904563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 506
Target Start/End: Complemental strand, 13735452 - 13735332
Alignment:
Q  386 aaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacga 485  Q
    ||||||||||||  ||||||||||| |||||||||| |||||||||||| |  || || ||||||||| |||| |||||||| ||||||||||| | |      
T  13735452 aaaaaggtcagtcaatacccaaacacagtaaagggttcgaccaccatctctaagagccgtacacaaaagtggtattattagcttttaaccaccaaagcag 13735353  T
Q  486 atgatattttgctttttctaa 506  Q
    |||| |||||||||| |||||    
T  13735352 atgaaattttgctttctctaa 13735332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 379491 - 379597
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| |||||||||||||   ||||||||||||||||| || || | | | ||||||||||| | ||| |||||||| | ||||||||||||||    
T  379491 aaaggtcagtcgatacccaaacaatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaat 379590  T
Q  488 gatattt 494  Q
    || ||||    
T  379591 gaaattt 379597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 505
Target Start/End: Complemental strand, 5909625 - 5909508
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||| || ||| | ||||||||| ||| |||||| || || | ||||||  |||| |    
T  5909625 aaaggttagttgatacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgctttcagccaccaatacgagt 5909526  T
Q  488 gatattttgctttttcta 505  Q
    || ||||| |||| ||||    
T  5909525 gaaattttactttctcta 5909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 979638 - 979543
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattt 494  Q
    |||||||||||| | |||||| ||||||||||||||||| | ||| |||| ||||||||  ||||||||||||| |||| | || || ||||||||    
T  979638 gatacccaaacataataaaggatccgaccaccatctttgtgtaccgtacataaaattgggcttattagcctttagccactacaaagagtgatattt 979543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 5100185 - 5100098
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatga 489  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||  |||||||  |||||||| |  | ||||||||| ||||||    
T  5100185 acccaaacaaaataaagggtccgaccaccatcgttgggtaccatacatgaaattggctttattagcttgaagccaccataaagaatga 5100098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 494
Target Start/End: Complemental strand, 27679759 - 27679653
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    ||||||| || |||||||||||| || | |||||||||||||||| | || ||||| ||||||||| ||   ||||||||||| | |||||  |||||||    
T  27679759 aaaggtcggtcgatacccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaaagtgacattattagccttaagccaccggaacgaat 27679660  T
Q  488 gatattt 494  Q
    || ||||    
T  27679659 gaaattt 27679653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 489
Target Start/End: Complemental strand, 22179541 - 22179440
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| |||||||||||||| |||| |||||||| ||||||| || ||||| ||| ||||  ||   |||||||| |||| |||||| || ||||    
T  22179541 aaaggtcagtcgatacccaaacaaattaaatggtccgactaccatctctgagaaccgtactcaaacatgacattattagcttttagccaccaaaatgaat 22179442  T
Q  488 ga 489  Q
    ||    
T  22179441 ga 22179440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 10032827 - 10032870
Alignment:
Q  295 atatattaacagcggcgatgaaaatttctcggcacaagatgtac 338  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||    
T  10032827 atatattaacagcggcgatgaaaacttctcagcacaaggtgtac 10032870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 21368461 - 21368418
Alignment:
Q  405 caaacaaagtaaagggtccgaccaccatctttgggaaccataca 448  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||    
T  21368461 caaacaaaataaaggatccgaccaccatctttgggtaccataca 21368418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 18718510 - 18718444
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaat 454  Q
    |||||||| | |||||||||||| | |||||| ||||||||||||||||  ||||| |||| |||||    
T  18718510 aaaggtcaatcgatacccaaacataataaaggatccgaccaccatctttaagaaccgtacataaaat 18718444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 475802 - 475907
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    |||||| |||||||| | ||| ||||||||||| ||||| ||||| ||||||||  |||  ||| |||| |||| ||||||||| || ||  ||||| ||    
T  475802 gatacctaaacaaagcataggatccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttact 475901  T
Q  499 ttttct 504  Q
    ||||||    
T  475902 ttttct 475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 35636922 - 35636982
Alignment:
Q  418 gggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacc 478  Q
    ||||||||||   |||||||  || ||||||||||| |||||||||||||||| |||||||    
T  35636922 gggtccgaccgtgatctttgacaagcatacacaaaagtggtgttattagccttcaaccacc 35636982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 15438747 - 15438853
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||| |  | | | |||||||||||||||||||||||||| | |||||| | |||||    
T  15438747 aaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaat 15438846  T
Q  488 gatattt 494  Q
    || ||||    
T  15438847 gaaattt 15438853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 15530051 - 15530157
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||| |  | | | |||||||||||||||||||||||||| | |||||| | |||||    
T  15530051 aaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaat 15530150  T
Q  488 gatattt 494  Q
    || ||||    
T  15530151 gaaattt 15530157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 506
Target Start/End: Complemental strand, 35183307 - 35183193
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgata 491  Q
    |||||| ||||||||||||  |||||||||||||||||||  | || ||| ||||||||||  | || |||| |||||||| ||||||||| ||||||||    
T  35183307 gtcagtcgatacccaaacactgtaaagggtccgaccaccaattatgagaatcatacacaaacatagtattatgagcctttagccaccataaagaatgata 35183208  T
Q  492 ttttgctttttctaa 506  Q
    |||| | ||||||||    
T  35183207 ttttaccttttctaa 35183193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 506
Target Start/End: Complemental strand, 36698983 - 36698869
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgata 491  Q
    |||||| ||||||||||||  |||||||||||||| ||||  | || ||  ||||||||||  | || |||| |||||||| ||||||||| ||||||||    
T  36698983 gtcagtcgatacccaaacactgtaaagggtccgactaccaattatgagagtcatacacaaacatagtattatgagcctttagccaccataaagaatgata 36698884  T
Q  492 ttttgctttttctaa 506  Q
    |||||  ||||||||    
T  36698883 ttttgtcttttctaa 36698869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 488
Target Start/End: Complemental strand, 6985289 - 6985200
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    ||||||||||||||| | |||||||||||||||||||||  |||| ||||||||  |||  ||| |||| |||| ||||||||| |||||    
T  6985289 gatacccaaacaaagcatagggtccgaccaccatctttgataaccgtacacaaatgtggctttactagcttttagccaccataaagaatg 6985200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 504
Target Start/End: Original strand, 9510374 - 9510490
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||| || | ||| | ||||||| |||  |||||||| || | |||||| || || |    
T  9510374 aaaggtcagtcgatacccaaacataataaagggtccgaccaccatctgtgagtaccctgcacaaaagtggccttattagctttaagccaccaaaaagagt 9510473  T
Q  488 gatattttgctttttct 504  Q
    || | ||| ||||||||    
T  9510474 gaaactttactttttct 9510490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 12340158 - 12340212
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    ||||||||||||| ||||||||||||||||  ||||||| |||||||| ||||||    
T  12340158 gatacccaaacaacgtaaagggtccgaccaatatctttgtgaaccataaacaaaa 12340212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 6244727 - 6244792
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    |||||||||| |||||||||||| | ||||||||| ||||||||||| || | ||| |||||||||    
T  6244727 aaaggtcagtcgatacccaaacataataaagggtctgaccaccatctgtgagtaccgtacacaaaa 6244792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 29722444 - 29722409
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||||||||||||||||| |||||||||||||||||    
T  29722444 gatacccaaacaaagtaacgggtccgaccaccatct 29722409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 42240446 - 42240384
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaat 454  Q
    |||||| ||||| |||||||||||| |||||| ||||||||||||| ||  |||| |||||||    
T  42240446 gtcagtcgatactcaaacaaagtaacgggtccaaccaccatctttgagagtcataaacaaaat 42240384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 494
Target Start/End: Complemental strand, 13868374 - 13868271
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    |||| ||||||||||||||| | |||||||||||||||||||||||| | ||| |||| ||||||||  |||||||| |||| |||||| || || ||||    
T  13868374 ggtcggttgatacccaaacataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagcttttagccaccacaaagagtgat 13868275  T
Q  491 attt 494  Q
    ||||    
T  13868274 attt 13868271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 505
Target Start/End: Original strand, 45795012 - 45795126
Alignment:
Q  391 ggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgat 490  Q
    |||| ||||||||||||||| | ||||||||||||||||||| |||| | ||| |||| ||||||||  |||||| |||||| |||||| || || ||||    
T  45795012 ggtcggttgatacccaaacataataaagggtccgaccaccatttttgtgtaccgtacataaaattggccttattaacctttagccaccacaaagagtgat 45795111  T
Q  491 attttgctttttcta 505  Q
    ||||  |||||||||    
T  45795112 atttaactttttcta 45795126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 23765777 - 23765835
Alignment:
Q  418 gggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaacca 476  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||    
T  23765777 gggtccgaccactatctttgagaaccatacacaaaagtggtgttattagccttcaacca 23765835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 28357474 - 28357587
Alignment:
Q  393 tcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatat 492  Q
    ||||| ||||||||||||| |||| ||||| ||||||||  | || ||||  ||||||||| ||||||||| ||| |||| ||||||||| |||||| ||    
T  28357474 tcagtcgatacccaaacaatgtaaggggtctgaccaccaattatgagaactgtacacaaaaatggtgttatgagcttttagccaccataaagaatgaaat 28357573  T
Q  493 tttgctttttctaa 506  Q
    | ||| ||||||||    
T  28357574 tgtgccttttctaa 28357587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 52028276 - 52028322
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccataca 448  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||    
T  52028276 acccaaacaaaataaagggtccgaccaccatctttgagtaccataca 52028322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 500
Target Start/End: Original strand, 5287589 - 5287689
Alignment:
Q  400 atacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgctt 499  Q
    ||||||||||||  |||||||| ||||||||| ||||| ||||| ||||||||| || | || || || || | |||||| ||||||||| ||||| |||    
T  5287589 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaattttactt 5287688  T
Q  500 t 500  Q
    |    
T  5287689 t 5287689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 22565649 - 22565693
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaacc 443  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||    
T  22565649 gatacccaaacaaagtaacgggtctgaccaccatctttgagaacc 22565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 38204418 - 38204380
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttg 437  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  38204418 gatacccaaacaaatcaaagggtccgaccaccatctttg 38204380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 506
Target Start/End: Original strand, 18959767 - 18959884
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    ||||||||| |||||| | |||||||||| ||||||||||||| || |  || |  ||||||||| | || ||||| || ||||||||||| || |||||    
T  18959767 aaggtcagtcgatacctagacaaagtaaaaggtccgaccaccagctcttagatctgtacacaaaagtagttttattggcttttaaccaccacaatgaatg 18959866  T
Q  489 atattttgctttttctaa 506  Q
    |  |||  ||||||||||    
T  18959867 aagtttaactttttctaa 18959884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 26701271 - 26701222
Alignment:
Q  385 taaaaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||| |||| ||| |||||||||||||||||| ||||| |||||||||||    
T  26701271 taaacaggttagtcgatacccaaacaaagtaacgggtctgaccaccatct 26701222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 34825029 - 34824924
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    ||||||||||||||| | ||||||| ||||||| |||||  |||| ||||||||  |||  ||| || | |||| ||||||||| |||||  ||||| ||    
T  34825029 gatacccaaacaaagcatagggtccaaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatgtaattttact 34824930  T
Q  499 ttttct 504  Q
    ||||||    
T  34824929 ttttct 34824924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 49458319 - 49458424
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    ||||||||||||| | | ||||||||||||||| |||||  |||| ||||||||  |||  ||| |||| |||| ||||||||| ||||   ||||| ||    
T  49458319 gatacccaaacaatgcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactagcttttagccaccataaagaatataattttact 49458418  T
Q  499 ttttct 504  Q
    ||||||    
T  49458419 ttttct 49458424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 479
Target Start/End: Original strand, 48380422 - 48380502
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    |||||||||||| |  |||| ||||||||||||||| |  ||||||||||||| | ||| ||| ||||| |||| ||||||    
T  48380422 gatacccaaacataacaaagagtccgaccaccatctctaagaaccatacacaagagtggcgttgttagcttttagccacca 48380502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 396 - 505
Target Start/End: Complemental strand, 14320675 - 14320566
Alignment:
Q  396 gttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatatttt 495  Q
    ||||||||||||||| | ||||||||||||||||| |||||| ||||| |||| ||| ||||  || |||||||||| |||||| || || ||||||||     
T  14320675 gttgatacccaaacataataaagggtccgaccaccgtctttgtgaaccgtacataaagttggccttcttagcctttagccaccacaaagagtgatattta 14320576  T
Q  496 gctttttcta 505  Q
     |||||||||    
T  14320575 actttttcta 14320566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 517
Target Start/End: Original strand, 31706349 - 31706478
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| ||||| |||||||| |||| |||||||||||||||| || || ||  |||||||  |||  |||||||| |||| ||||||||||||||    
T  31706349 aaaggtcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaat 31706448  T
Q  488 gatattttgctttttctaacaactgtaaaa 517  Q
    |  ||||  |||| ||||| | ||||||||    
T  31706449 ggaatttaactttatctaagagctgtaaaa 31706478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 6936970 - 6937076
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||||||| ||||||||||||||  | |||||| |||| |||||| || ||||| ||||||||| ||| |||||||||  | | |||||| |||||||    
T  6936970 aaaggtcagtcgatacccaaacaaatcatagggtctgaccgccatctctgagaaccgtacacaaaaatggcgttattagctctcagccaccaaaacgaat 6937069  T
Q  488 gatattt 494  Q
    || ||||    
T  6937070 gaaattt 6937076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 506
Target Start/End: Original strand, 14497719 - 14497836
Alignment:
Q  389 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatg 488  Q
    |||||||||  ||||||| ||||| |||||  ||  |||||||||| || ||||| ||||||||| |||| ||||| |  ||||||||||| ||||||||    
T  14497719 aaggtcagtcaatacccagacaaaataaagaatctaaccaccatctctgagaaccgtacacaaaagtggttttattggtttttaaccaccacaacgaatg 14497818  T
Q  489 atattttgctttttctaa 506  Q
    |||| |  ||||||||||    
T  14497819 atatgtaactttttctaa 14497836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 506
Target Start/End: Original strand, 19349548 - 19349641
Alignment:
Q  413 gtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgctttttctaa 506  Q
    |||||||||||||||||||  | || ||||||||||||||  | || ||||  ||||||| ||||||||| |||||||||||| | ||||||||    
T  19349548 gtaaagggtccgaccaccaattatgagaaccatacacaaacgtagtattatgggcctttagccaccataaagaatgatattttaccttttctaa 19349641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 505
Target Start/End: Original strand, 32185293 - 32185380
Alignment:
Q  418 gggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgctttttcta 505  Q
    ||||||||||||||||||||   |||||| ||||| ||||  ||||||||||||| ||||||||| |||||  ||||| |||| ||||    
T  32185293 gggtccgaccaccatctttgcacaccataaacaaacttggcattattagcctttacccaccataatgaatggaattttactttatcta 32185380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 508
Target Start/End: Complemental strand, 2710274 - 2710156
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatga 489  Q
    ||||||||||||||||||| | |  || ||||| ||||||||||||||  ||| |||||||||  |||  |||  ||| |||| |||||||||||||| |    
T  2710274 aggtcagttgatacccaaatataacaaggggtctgaccaccatctttgataactatacacaaacgtggccttacaagcttttagccaccataacgaataa 2710175  T
Q  490 tattttgctttttctaaca 508  Q
     ||||| || |||||||||    
T  2710174 gattttactctttctaaca 2710156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 506
Target Start/End: Complemental strand, 29977572 - 29977459
Alignment:
Q  393 tcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatat 492  Q
    ||||| ||| ||||||||   ||||| ||||||||||||  | || ||||||||||||||  | || ||||  ||||||| ||||||||| |||||||||    
T  29977572 tcagtcgattcccaaacactataaagagtccgaccaccaattgtgagaaccatacacaaacatagtattatgggcctttagccaccataaagaatgatat 29977473  T
Q  493 tttgctttttctaa 506  Q
    ||| | ||||||||    
T  29977472 tttaccttttctaa 29977459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 14687555 - 14687469
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatga 489  Q
    ||||||||||| |||||||||||||||| ||| ||||| ||| ||||  ||||||| ||||||||| |  | ||||||||| ||||||    
T  14687555 acccaaacaaaataaagggtccgaccactatcgttgggtacc-tacatgaaattggcgttattagcttgaagccaccataaagaatga 14687469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Original strand, 32362657 - 32362692
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatct 434  Q
    |||||||||||||||||| |||||||||||||||||    
T  32362657 gatacccaaacaaagtaacgggtccgaccaccatct 32362692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 8385196 - 8385142
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    ||||||||||||| ||||||||| |||||||||| ||||  ||||||| ||||||    
T  8385196 gatacccaaacaacgtaaagggttcgaccaccatgtttgtaaaccataaacaaaa 8385142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 453
Target Start/End: Original strand, 33095576 - 33095614
Alignment:
Q  415 aaagggtccgaccaccatctttgggaaccatacacaaaa 453  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  33095576 aaagggtccgaccaccatctttgagaaccgtacacaaaa 33095614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 2364694 - 2364799
Alignment:
Q  399 gatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattttgct 498  Q
    |||||| |||||||| | ||| ||||||||||| ||||| ||||| ||||||||  |||  ||| |||| |||| ||||||||| || ||  ||||| ||    
T  2364694 gatacctaaacaaagcataggatccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttact 2364793  T
Q  499 ttttct 504  Q
    ||||||    
T  2364794 ttttct 2364799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 17252555 - 17252514
Alignment:
Q  390 aggtcagttgatacccaaacaaagtaaagggtccgaccacca 431  Q
    |||||||| ||||||||||||||||||  |||||||||||||    
T  17252555 aggtcagtcgatacccaaacaaagtaacaggtccgaccacca 17252514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 14620700 - 14620640
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccataca 448  Q
    |||||||  ||||||| ||||||||| ||||| |||||||||||||| |  ||||||||||    
T  14620700 aaaggtcgattgatacgcaaacaaagcaaaggatccgaccaccatctctaagaaccataca 14620640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 3495 - 3404
Alignment:
Q  388 aaaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccacca 479  Q
    |||||||||| ||||||||||||||  || ||||||||||||||||| || |||||||| |||||| ||||||| || || || ||||||||    
T  3495 aaaggtcagtcgatacccaaacaaatcaacgggtccgaccaccatctatgtgaaccataaacaaaaatggtgttgtttgctttcaaccacca 3404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 506
Target Start/End: Complemental strand, 139492 - 139378
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgata 491  Q
    |||||| ||||||||||||  ||||||| |||||||||||  | || || ||||| |||||  | || |||| ||||||||  |||||||| ||||||||    
T  139492 gtcagtcgatacccaaacactgtaaaggatccgaccaccaattatgagagccatatacaaacatagtattatgagcctttagtcaccataaagaatgata 139393  T
Q  492 ttttgctttttctaa 506  Q
    |||||| ||||||||    
T  139392 ttttgccttttctaa 139378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 494
Target Start/End: Complemental strand, 64297 - 64205
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattt 494  Q
    |||||||||||||||||| |||||||| ||||| || ||||| ||||||||  |||  ||||| ||||| | ||||||||| |||||| ||||    
T  64297 acccaaacaaagtaaaggatccgaccatcatctctgagaaccgtacacaaatgtggcattatttgccttaagccaccataaagaatgaaattt 64205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 494
Target Start/End: Complemental strand, 51002 - 50910
Alignment:
Q  402 acccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaatgatattt 494  Q
    |||||| ||| ||||||| |||||||||||||| || ||||| ||||||||  |||  || || ||||| | ||||||||| |||||| ||||    
T  51002 acccaagcaatgtaaaggatccgaccaccatctctgagaaccttacacaaatgtggccttgtttgccttaagccaccataaagaatgaaattt 50910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 17732 - 17637
Alignment:
Q  392 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccatacacaaaattggtgttattagcctttaaccaccataacgaat 487  Q
    |||||| ||||||||||||| | ||||||||||||||||| || || | ||| ||||||||| |   ||| |||||||| | ||||||||||||||    
T  17732 gtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaaaataacgttcttagccttaagccaccataacgaat 17637  T

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Target: scaffold0314 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 18384 - 18425
Alignment:
Q  387 aaaaggtcagttgatacccaaacaaagtaaagggtccgacca 428  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  18384 aaaaggtcagtcgatacccagacaaagtaaagggtccgacca 18425  T

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