View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17350_high_4 (Length: 463)
Name: NF17350_high_4
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17350_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 28783986 - 28783539
Alignment:
| Q |
1 |
catagtgcaacagctagggctttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtact |
100 |
Q |
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| T |
28783986 |
catagtgcaacagct-gcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtact |
28783888 |
T |
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| Q |
101 |
gctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaatccttttggcctctcttctaacatcctctttttcctaagcttcctcatcctg |
200 |
Q |
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| T |
28783887 |
gctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctg |
28783788 |
T |
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| Q |
201 |
atttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctcc |
300 |
Q |
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| T |
28783787 |
atttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctcc |
28783688 |
T |
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| Q |
301 |
ctttcctcatatccctatttacaaacctccctttcctcatattcctatctacaagaaaccttgccctccacctgtgcctatctatgaaaaacctatccct |
400 |
Q |
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| T |
28783687 |
attttctcatattcctatttacaaacctccctttcctcatattcctatctacaagaaaccttgtcctccacctgtgcctatctatgaaaaacctatccct |
28783588 |
T |
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| Q |
401 |
cctcctacacctgtttatgagaaacctcttcctccacctacacctgtct |
449 |
Q |
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| T |
28783587 |
cctcctacacctgtttatgagaaacctcttcctccacctacacctgtct |
28783539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 439
Target Start/End: Complemental strand, 28783541 - 28783450
Alignment:
| Q |
348 |
tctacaagaaaccttgccctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctccacct |
439 |
Q |
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| T |
28783541 |
tctacgagaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacct |
28783450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 28783458 - 28783388
Alignment:
| Q |
365 |
cctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
435 |
Q |
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| T |
28783458 |
cctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
28783388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 28783572 - 28783520
Alignment:
| Q |
383 |
tatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
435 |
Q |
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| T |
28783572 |
tatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctcc |
28783520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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