View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17350_high_5 (Length: 447)
Name: NF17350_high_5
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17350_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 42445771 - 42445377
Alignment:
| Q |
13 |
tgaagtggaatttatgtaggccttgatctttagtccagcagcatagcttacatgtgttgctagtaaggagcaatgagatggacatcatcagctgagagac |
112 |
Q |
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| T |
42445771 |
tgaagtggaatttatgtaggccttgatctttagtccagcagcatagcttacatgtgttgctggtagg--------acatgtacatca---gctgagagac |
42445683 |
T |
|
| Q |
113 |
tgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttcctataccccctcccctctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445682 |
tgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttcctataccccctcccctctc |
42445583 |
T |
|
| Q |
213 |
acacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcctgcatatgctaagggc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445582 |
acacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcctgcatatgctaagggc |
42445483 |
T |
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| Q |
313 |
aacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccacaatggttctgtcaatag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445482 |
aacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccacaatggttctgtcaatag |
42445383 |
T |
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