View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17350_high_8 (Length: 376)
Name: NF17350_high_8
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17350_high_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 72 - 376
Target Start/End: Complemental strand, 10194415 - 10194107
Alignment:
| Q |
72 |
aacgcatttaaaggtaaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggttttct---------tgtcaattat |
162 |
Q |
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| T |
10194415 |
aacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggttttctggtttttcttgtcaattat |
10194316 |
T |
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| Q |
163 |
aatttgcgatctatgatcaaacactgttaggcggcatgttcagtaacagatgagttcgaattccttgatcctgatatcaggatgcctggaatggtgttag |
262 |
Q |
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| T |
10194315 |
aatttgcgatttatgatcaaacactgttaggctgcatgttcagtaacagatgagttcgaattccttgatcctgatatcaggatgcctggaatggtgttag |
10194216 |
T |
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| Q |
263 |
ggacagaaaattttgataagttccatgttgcagtgaatgcaattgatgcgatgcagtttatgacaaattgcaataccagattatgtactactggtataag |
362 |
Q |
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| T |
10194215 |
ggacagaaaattttgataagttccatgttgcagtgaatgcaattgattc-----agtttatgacaaattgcaataccagattatgtactactggtataag |
10194121 |
T |
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| Q |
363 |
gttatagaacacat |
376 |
Q |
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| T |
10194120 |
gttatagaacacat |
10194107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 10194472 - 10194435
Alignment:
| Q |
8 |
tgagatgaactgtgctggcttgagttttggaaacaaag |
45 |
Q |
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| T |
10194472 |
tgagatgagctgtgctggcttgagttttggaaacaaag |
10194435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 19459235 - 19459272
Alignment:
| Q |
8 |
tgagatgaactgtgctggcttgagttttggaaacaaag |
45 |
Q |
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| T |
19459235 |
tgagatgagctgtgctggcttgagttttggaaacaaag |
19459272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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