View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17350_low_1 (Length: 405)
Name: NF17350_low_1
Description: NF17350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17350_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 10905267 - 10905644
Alignment:
| Q |
11 |
aagaagttgattgttttatatattattgtaacaatgtgtgtgattgcatgcaagtttattggttgccatgaagtacaaagatggccttgtattttttgat |
110 |
Q |
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| T |
10905267 |
aagaagttgattgttttatatattattgtaacaatgtgtgtgattgcatgcaagtttattggttgccatgaactacaaagatggccttgtattttttgat |
10905366 |
T |
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| Q |
111 |
gtacgtactgttaatcattataaaagaaaatactgtgttcttcgatgttatcttttggatacaaactcaagaacatttttccgtatgacatatcggttct |
210 |
Q |
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| T |
10905367 |
gtacgtactgttaatcattataaaagaaaatactgtgttcttctatgttatcttttggatacaaactcaagaacatttttccgtatgacatatcggttct |
10905466 |
T |
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| Q |
211 |
gtttattcactctttattttgtccatttatttcaagtttcagttcaactattgatgtcatttaaggatacattaatgttaaagaatcaattaagtacatt |
310 |
Q |
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| T |
10905467 |
gtttattcactctttattttgtccatttatttcaagtttcagttcaactattgatgtcatttaaggatacattaatgttaaagaatcaattaagtacatt |
10905566 |
T |
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| Q |
311 |
gcaatgactgtttgatcatttggttaggtaactgaaattggttgaatcgttagataagtggagcaaaaaatgtgagga |
388 |
Q |
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| T |
10905567 |
gcaatgactgttcgatcatttggttaggtaaccgaaattggttgaatcgttagataagtggagcaaaaaatgtgagga |
10905644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 74 - 389
Target Start/End: Original strand, 10860213 - 10860529
Alignment:
| Q |
74 |
tgccatgaagtacaaagatggccttgtattttttgatgtac--gtactgttaatcattataaaagaaaatactgtgttcttcgatgttatcttttggat- |
170 |
Q |
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| T |
10860213 |
tgccatgaagaataaatatggccttgtattgtttgatatatatgtactattaatcat---aaaagaaaatactgtgttcttgtatgttatcttttgaata |
10860309 |
T |
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| Q |
171 |
acaaactcaagaacatttttccgtatgacatatcggttctgtttattcactctttattttgtccatttatttcaagtttcagttcaactattgatgtcat |
270 |
Q |
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| T |
10860310 |
acaaactcaagaacatttttcagtatgctgtat-tgttctatttgtttactcttaattttgtccatttatttcaagtttcagtttaactatggatgtctt |
10860408 |
T |
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| Q |
271 |
ttaaggatacattaatgttaaagaatca-attaagtacattgcaatgactgtttgatcatttggttaggtaactgaaattggttgaatcgttagataagt |
369 |
Q |
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| T |
10860409 |
ttaaggatgcattaatgttaaagaatcagtttaactatattgcaatgactgttggaccatttggtcgggaaactgaaatcggctgaattgtttgataagt |
10860508 |
T |
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| Q |
370 |
ggag-caaaaaatgtgaggaa |
389 |
Q |
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| T |
10860509 |
agagataaataatgtgaggaa |
10860529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 10860168 - 10860210
Alignment:
| Q |
14 |
aagttgattgttttatatattattgtaacaatgtgtgtgattg |
56 |
Q |
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| T |
10860168 |
aagttgattgttctatatattaatgtaacaatgtgtgtgattg |
10860210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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