View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_high_12 (Length: 371)
Name: NF17351_high_12
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 27502607 - 27502264
Alignment:
| Q |
12 |
aatactcttaattggttaggattcgatctccattatagtaacctcagaaatggttgaggtcatttcattttataattttttcnnnnnnnnnntcatttta |
111 |
Q |
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| T |
27502607 |
aatactcttaattggttaggattcgatctccattatagtaacctcagaaatggttgaggtcatttcattttatgattttttcaaaaaaaaaatcatttta |
27502508 |
T |
|
| Q |
112 |
tgtttctgcaacaatattaaagttttattctacgttcgcccacacttatttcaataaaagaatacgtgattttacattatcaatcaaacatagatttgag |
211 |
Q |
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| T |
27502507 |
tgtttctgcaacaatattaaagttttattttatgtacgcccacacttatttcaataaaagaatacgtggttttatattatcaatcaaacatagatttgag |
27502408 |
T |
|
| Q |
212 |
tttgtacaatggacagctctcattacaaaatactcattccgatctcatatattaaagaaaatttgatcaacaaaatttgatatattttatccaaattttg |
311 |
Q |
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||||||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27502407 |
tttgtacaatggacagccctcattacaaagtactcctttcgatctcatatattagagaaaatttgatcaacaaaatttgatatattttatccaaattttg |
27502308 |
T |
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| Q |
312 |
aactagacattaacttttattgatccaattttttcttagatatg |
355 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
27502307 |
aactagacatcaacttttattgattcaattttttcttagatatg |
27502264 |
T |
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