View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17351_high_13 (Length: 339)
Name: NF17351_high_13
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_high_13 |
 |  |
|
| [»] scaffold0051 (1 HSPs) |
 |  |  |
|
| [»] scaffold0759 (1 HSPs) |
 |  |  |
|
| [»] scaffold0009 (1 HSPs) |
 |  |  |
|
| [»] scaffold0057 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 127 - 323
Target Start/End: Original strand, 32041963 - 32042159
Alignment:
| Q |
127 |
attaaatacactttgctaaatgctggttgttattgtgcacaaaatagaaaccaatgcattcaattctattccaactagaaattgcaaagctgtaaccaac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32041963 |
attaaatacactttgctaaatgctggttgttattgtgcacaaaatagaaaccaatgcattcaattctattccaactataaattgcaaagctgtaaccaac |
32042062 |
T |
 |
| Q |
227 |
caaccatcaatgttttctgtccagtttatgtagtacaattgtagtagttagtagtagtacttagttgcacatttttggtacaaatatcttttgtagt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32042063 |
caaccatcaatgttttctgtccagtttatgtagtacaattgtagtagttagtagtagtacttagttgcacatttttggtacaaatatcttttgtagt |
32042159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 5426303 - 5426222
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5426303 |
ctcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacattaactgttatattagta |
5426222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 47134791 - 47134709
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
47134791 |
ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtat |
47134709 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 16300476 - 16300394
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || | |||||||||| || |||| ||||||||| ||| |||| ||||| |
|
|
| T |
16300476 |
ctcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacattaattttaatataagtat |
16300394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 38894825 - 38894760
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || |||||||||||| ||||| ||||||||| |
|
|
| T |
38894825 |
ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttactttcttattagtat |
38894760 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 43116118 - 43116053
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | || ||||||||||| | |||||||||||||| |
|
|
| T |
43116118 |
ttaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtat |
43116053 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 52306156 - 52306107
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggt |
83 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| || |||||||||||| |
|
|
| T |
52306156 |
ctcaaccaattagtaatttatcaaattgccccttataggggcaaaatggt |
52306107 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 1367365 - 1367313
Alignment:
| Q |
47 |
taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
1367365 |
taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
1367313 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 53800586 - 53800493
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatataga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53800586 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggtaaaatcaatggacattaacttttatattagtattagtatataga |
53800493 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 26777850 - 26777932
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
26777850 |
ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacgttaacttttatattagtat |
26777932 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 4139350 - 4139429
Alignment:
| Q |
37 |
aaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4139350 |
aaccaatttgtaatttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacattaacttttatattagtat |
4139429 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 8393650 - 8393568
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || |||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
8393650 |
ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtat |
8393568 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 19895645 - 19895727
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||||||||||||| || |||||||||||| ||| ||||| ||||| |
|
|
| T |
19895645 |
ctcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacattttcttctatataagtat |
19895727 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 18682576 - 18682509
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaa |
101 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || |||||||||||| || |||| ||||||||| |
|
|
| T |
18682576 |
ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaa |
18682509 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 39838218 - 39838265
Alignment:
| Q |
69 |
taagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
39838218 |
taagggtaaaatggtaaaatcaacggacattaacttttatattagtat |
39838265 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 22519276 - 22519211
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || |||||||||||| || |||||||||||| |
|
|
| T |
22519276 |
ctcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggacatt |
22519211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19368941 - 19369006
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| || |||||||||||| ||||||| ||||||| |
|
|
| T |
19368941 |
ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaaatcaagggacatt |
19369006 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 35855274 - 35855197
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagat |
128 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || | || ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
35855274 |
ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatttcttttcttattagtattagtatatagat |
35855197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 25616497 - 25616593
Alignment:
| Q |
34 |
ctcaaccaattt-gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagatt |
129 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616497 |
ctcaaccaattttgtaatttaccaaattgcccctcttaagggcaaaatggtaaaatcaatggacattaacttttatattagtattagtatatagatt |
25616593 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 7389285 - 7389197
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7389285 |
ctcaaccaatttgtaatttaccaaattgcccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtattagtat |
7389197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 4466420 - 4466502
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4466420 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtat |
4466502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 25620714 - 25620790
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatat |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
25620714 |
ctcaactaatttgtaatttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacatgaacttttatat |
25620790 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 45298259 - 45298343
Alignment:
| Q |
41 |
aatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatata |
125 |
Q |
| |
|
|||| |||| ||||||||||||||||| || ||| |||| ||| ||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
45298259 |
aattagtaaattaccaaattgcccctcttaggggtaaaaaggtaaaatcaatgtacatcattttttatattagtattagtatata |
45298343 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 41973043 - 41972965
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatatta |
112 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| || |||||||||||| || |||| ||||||| | |||||||||| |
|
|
| T |
41973043 |
ctcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttaattttatatta |
41972965 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 40587709 - 40587757
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || |||||||||||| |
|
|
| T |
40587709 |
ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt |
40587757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 46104266 - 46104178
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46104266 |
ctcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaatggacattaacttttatattagtattagtat |
46104178 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 2116176 - 2116094
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2116176 |
ctcaaccaatttataatttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtat |
2116094 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 12682755 - 12682837
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12682755 |
ctcaaccaatttataatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat |
12682837 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35833430 - 35833488
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttata |
109 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35833430 |
ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttata |
35833488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 3821198 - 3821264
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatta |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||| || |||| |||||||| |
|
|
| T |
3821198 |
ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatta |
3821264 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 5752538 - 5752471
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaa |
101 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || |||||||||||| || |||| ||||||||| |
|
|
| T |
5752538 |
ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaa |
5752471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 15704198 - 15704116
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| || |||||||||||| || | || | |||||| |||||||| ||||| |
|
|
| T |
15704198 |
ctcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatttaaagaacattactttttatataagtat |
15704116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 39716717 - 39716782
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
39716717 |
ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
39716782 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 62149 - 62067
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
62149 |
ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat |
62067 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 4108041 - 4107959
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4108041 |
ctcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtat |
4107959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 28573828 - 28573910
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| ||||| |
|
|
| T |
28573828 |
ctcaaccaatttgtaatttaccaaattgcccctcctaggggcaaaatggtaaaatcaaaggatattaacttttatatcagtat |
28573910 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 6969295 - 6969377
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || |||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
6969295 |
ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaacttttatattagtat |
6969377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 34317031 - 34316957
Alignment:
| Q |
41 |
aatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagta |
115 |
Q |
| |
|
|||| |||| ||||||||||||||||| || |||||||| ||| |||||||||||||| | ||||||||||||| |
|
|
| T |
34317031 |
aattagtaaattaccaaattgcccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagta |
34316957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 9981259 - 9981335
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatat |
110 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || ||| |||||||| || |||||| ||||| ||||||||| |
|
|
| T |
9981259 |
ctcaaccaattagcaatttaccaaattgccccttataggggtaaaatggtaaattcaatgaacatttccttttatat |
9981335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 18394687 - 18394761
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatata |
125 |
Q |
| |
|
||||||||||||||||| | ||||||||| | ||| ||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
18394687 |
ttaccaaattgcccctcttgagggcaaaaatggtaattcataggacattaattttcttattagtattagtatata |
18394761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 15045546 - 15045611
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | || |||||||||||| || |||| ||||||| |
|
|
| T |
15045546 |
ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatt |
15045611 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 49146122 - 49146205
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaac-ttttatattagtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
49146122 |
ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaactttttatattagtat |
49146205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 4848436 - 4848353
Alignment:
| Q |
34 |
ctcaaccaattt-gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4848436 |
ctcaaccaattttgtaatttaccaaattacccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat |
4848353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 46197487 - 46197427
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatatt |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46197487 |
ttaccaaattgcctctcctaagggcaaaatggtaaaatcaatggacattaacttttatatt |
46197427 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 688150 - 688068
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || |||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
688150 |
ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtat |
688068 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 42912207 - 42912125
Alignment:
| Q |
46 |
gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagat |
128 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||| ||| |||||||||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
42912207 |
gtaaattagcaaattgcccctcttaagggcaaaaaggtaaaatcaatggacatcactttttatactagtactagtatatagat |
42912125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 11840447 - 11840512
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||||||||||| || |||||||||||| |
|
|
| T |
11840447 |
ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt |
11840512 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 21600970 - 21601035
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||||||||||| || |||||||||||| |
|
|
| T |
21600970 |
ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt |
21601035 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 39651148 - 39651213
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
39651148 |
ctcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
39651213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 9143563 - 9143497
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatta |
100 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| || |||||||||||| || |||| ||| |||| |
|
|
| T |
9143563 |
ctcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggatatta |
9143497 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 39276700 - 39276635
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | || |||||||||||| || |||| ||||||| |
|
|
| T |
39276700 |
ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatt |
39276635 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 12422345 - 12422438
Alignment:
| Q |
35 |
tcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagat |
128 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| || |||||||||||| ||||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
12422345 |
tcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacatgaatttttatattagtattagtatatagat |
12422438 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 34727334 - 34727417
Alignment:
| Q |
34 |
ctcaaccaattt-gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| || |||| | ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34727334 |
ctcaaccaattttgtaatttatcaaattgcctcttctaaagacaaaatggtaaaatcaatggacattaacttttatattagtat |
34727417 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 43352992 - 43352918
Alignment:
| Q |
49 |
atttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtata |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | || ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
43352992 |
atttaccaaattgcccctcctataggcaaaattggaaattcaatggacatgtatttttatattagtattagtata |
43352918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 3088031 - 3088097
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||||||||||| || |||| |||||||| |
|
|
| T |
3088031 |
ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatta |
3088097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 33709813 - 33709895
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||| | || ||| |||||||| || |||| ||||||||| ||| |||| ||||| |
|
|
| T |
33709813 |
ctcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacattaattttaatataagtat |
33709895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 22693804 - 22693723
Alignment:
| Q |
35 |
tcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||||||| |||| ||| |||| | |||||||| |||||||||| | |||||||| ||||| | |||||||||||||| |
|
|
| T |
22693804 |
tcaaccaattagtaaattatcaaaatacccctcctgagggcaaaattggaaaatcaatagacatctatttttatattagtat |
22693723 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 25698717 - 25698782
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
25698717 |
ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
25698782 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 30140589 - 30140524
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| | || |||||||||||| || |||| ||||||| |
|
|
| T |
30140589 |
ctcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatt |
30140524 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 5891 - 5973
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat |
116 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| || |||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
5891 |
ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttttatattagtat |
5973 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 28607308 - 28607209
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat-tagtatatagattaaa |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || ||||||||| || |||||||||||| | ||| |||| ||||| ||| |||||||||||| |
|
|
| T |
28607308 |
ctcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtatatag-atatagattaaa |
28607210 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 10050189 - 10050254
Alignment:
| Q |
34 |
ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
10050189 |
ctcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
10050254 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 1693995 - 1694023
Alignment:
| Q |
51 |
ttaccaaattgcccctcctaagggcaaaa |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1693995 |
ttaccaaattgcccctcctaagggcaaaa |
1694023 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 2952831 - 2952779
Alignment:
| Q |
47 |
taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
2952831 |
taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
2952779 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 9545788 - 9545840
Alignment:
| Q |
47 |
taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
9545788 |
taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
9545840 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 18096575 - 18096487
Alignment:
| Q |
37 |
aaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatata |
125 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| || |||||||||||| || |||| ||||||| |||||||| ||||| |||||||| |
|
|
| T |
18096575 |
aaccaattaataatttgccaaattaccccttataggggcaaaatggtaaattcaaaggacatttctttttatataagtataagtatata |
18096487 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 225519 - 225457
Alignment:
| Q |
37 |
aaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||| || |||||||||||| |
|
|
| T |
225519 |
aaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt |
225457 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 20592 - 20644
Alignment:
| Q |
47 |
taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt |
99 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| || |||| ||||||| |
|
|
| T |
20592 |
taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt |
20644 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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