View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_high_15 (Length: 328)
Name: NF17351_high_15
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 40186413 - 40186708
Alignment:
| Q |
18 |
caaaacccttatcacaaaatcatcagtaagttgttgaattctaacatttgcaagttgattctcaaccttatcatcatcatcccaatcaggccctaaaatt |
117 |
Q |
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| T |
40186413 |
caaaacccttatcacaaaatcatcagtaagttgttgaattctaacatttgcaagttgattctcaaccttatcatcatcatcccaatcaggccctaaaatg |
40186512 |
T |
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| Q |
118 |
atatcaaccactttggtgacaacactttgcattgtactttcctgaagcatctcactataaaagtgtgaaagagccacgccatcactaatcatctttttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40186513 |
atatcaaccactttggtgacaacactttgcattgtactttcctgaagcatctcactataaaagtgtgaaagagccaggccatcactaatcatctttttat |
40186612 |
T |
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| Q |
218 |
ccttttcaaaccatgatgaaattgccaaatgaggtaaaaaccctttttccttcattgtctgtaaagtaatccaaatttgctctttcatatatctgtg |
314 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40186613 |
ccttttcaaaccatgatgaaattgccaaatgaggt-aaaaccctttttccttcattgtctgtaaagtaatccaaatttgctctttcatatagctgtg |
40186708 |
T |
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