View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17351_high_7 (Length: 560)
Name: NF17351_high_7
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 2041529 - 2041000
Alignment:
| Q |
13 |
ttatactatatataggttaaaatccattagggttgcagtgaaaaacatatctaatacttttactcattgagtttttgttcctttgttttcgatccactgc |
112 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041529 |
ttatactatatataggttaaaagccattagggttgcagtgaaaaacatatctaatacttttactcattgagtttttgttcctttgttttcgatccactgc |
2041430 |
T |
|
| Q |
113 |
ttttgtttcgaaggaaacttgctattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgt |
212 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
2041429 |
ttttgtttcgaaggaatctagctattacgatgagaagggacgaagtatctgcgagaaagaagccatcatcatcggtgcttttgtttcaaaggaatcctgt |
2041330 |
T |
|
| Q |
213 |
tatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041329 |
tatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataatgtaaaataccttggagatgttagtcatgttgatcat |
2041230 |
T |
|
| Q |
313 |
catatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatcaat |
412 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2041229 |
gatatgcttgagagaatcttgcctcactgcacacttgaccagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatcaat |
2041130 |
T |
|
| Q |
413 |
tgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgcagct |
512 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2041129 |
tgtggagaaagttctttgagaagcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagct |
2041030 |
T |
|
| Q |
513 |
gtatgaggctaaggtcaaaaaagtggctca |
542 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
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|
| T |
2041029 |
gtatgaggctaaggtcaaaagagtggctca |
2041000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 135 - 541
Target Start/End: Original strand, 1352250 - 1352643
Alignment:
| Q |
135 |
tattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
234 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1352250 |
tattatgatgagaagagatgaaatatctgcgagaaggaagccatcatcatcggtgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
1352349 |
T |
|
| Q |
235 |
acacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgc |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
1352350 |
acacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgc |
1352449 |
T |
|
| Q |
335 |
ctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaa |
434 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1352450 |
ctcactgcacacttgaacagttgatgcatattgagaagacaaataaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaa |
1352549 |
T |
|
| Q |
435 |
gcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaa |
534 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |
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| T |
1352550 |
gcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaa-------------cacttggttgcagttgtatgaggctaaagtcaaaaaa |
1352636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 208 - 542
Target Start/End: Original strand, 1357444 - 1357778
Alignment:
| Q |
208 |
cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357444 |
cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttg |
1357543 |
T |
|
| Q |
308 |
atcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
407 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357544 |
atcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgcatattgagaagtccactcaagggatggatttgagccctataacaga |
1357643 |
T |
|
| Q |
408 |
tcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttg |
507 |
Q |
| |
|
| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1357644 |
taaattgtggaaaaagttctttgaaaagcaatttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttg |
1357743 |
T |
|
| Q |
508 |
cagctgtatgaggctaaggtcaaaaaagtggctca |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
1357744 |
cagctgtatgaggctaaggtcaaaaaagtggctca |
1357778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 262 - 541
Target Start/End: Original strand, 1364328 - 1364594
Alignment:
| Q |
262 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |
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|
| T |
1364328 |
aaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgcctcactgcacacttgaacagttgatgc |
1364427 |
T |
|
| Q |
362 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatga |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1364428 |
atattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaaagttctttgagaagcaatttggtataaattgcactaatga |
1364527 |
T |
|
| Q |
462 |
agtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctc |
541 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
1364528 |
agtagttaagaagatgaaagaaa-------------cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctc |
1364594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 36717295 - 36717690
Alignment:
| Q |
135 |
tattacgatgagaagggatgaagtatctgcgagaaagaagccatcatcatcactgcttttgtttcaaaggaatcctgttatgatgaaaagaaaggatcaa |
234 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36717295 |
tattatgatgagaagggatgaaatatctgcaagaaagaagccatcgt------------tgtttcaaaggaatcctgttatgatgaagagaaaggatcaa |
36717382 |
T |
|
| Q |
235 |
acacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgc |
334 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
36717383 |
acatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagagaatcttgc |
36717482 |
T |
|
| Q |
335 |
ctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaa |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||| ||| |||||||||||| |||||||| || |
|
|
| T |
36717483 |
ctcactgcacacttgatcagttgatgcatattgagaaggcaagtgaagggatggatttgagccctataactgataaattgtggaaaaaattctttgaaaa |
36717582 |
T |
|
| Q |
435 |
gcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaa |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36717583 |
gcagtttggtataaattgcactaatgaagtagttaagaagatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtaaaaaaa |
36717682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 214 - 508
Target Start/End: Complemental strand, 24620630 - 24620337
Alignment:
| Q |
214 |
atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
313 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24620630 |
atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatc |
24620531 |
T |
|
| Q |
314 |
atatgcttgagaaagtcttgcctcactgcacacttgatcagttgatgcatattgagaagtccactcaagggatggatttgagccctataacagatcaatt |
413 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | | ||||||||||||||| ||| | || ||||||||||||||| |||| | || || | |
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|
| T |
24620530 |
atatgcttgagtgaatcttgcctcactgcacacttgaccggaacatgcatattgagaaggccaatgaa-ggatggatttgagccatatatcgaataaact |
24620432 |
T |
|
| Q |
414 |
gtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaagaaaaaagagtttcgttcacttggttgc |
508 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||| |||||| |||||||| |||||| | ||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
24620431 |
gtggaaaaagtttattgaaaagcagtttggtataatttgcacaaatgaagtagttaaggatatgaaagaaaaaatagtttcattcacatggttgc |
24620337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 18180026 - 18179888
Alignment:
| Q |
382 |
gggatggatttgagccctataacagatcaattgtggaaaatgttctttgagaagcagtttggtataaattgcactaatgaagtcgttaagaagatgaaag |
481 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| |||||| |||||| | ||| || ||||| || |
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|
| T |
18180026 |
gggatggatttgagcccggtaacagataaattgtggaaaaagttctttgaaaagcagtttggtataagttgcacaaatgaaataattaggaggatgacag |
18179927 |
T |
|
| Q |
482 |
aaaaaagagtttcgttcacttggttgcagctgtatgagg |
520 |
Q |
| |
|
|||||||||| || |||| ||||||||| ||||||||| |
|
|
| T |
18179926 |
aaaaaagagtgtcattcagatggttgcagttgtatgagg |
18179888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 242 - 372
Target Start/End: Complemental strand, 18180249 - 18180119
Alignment:
| Q |
242 |
tggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgttagtcatgttgatcatcatatgcttgagaaagtcttgcctcactg |
341 |
Q |
| |
|
||||||||||||||||| | | |||||| |||||| ||| |||||||||| ||||| ||| ||||||||||||| ||||||| | ||||||| ||||| |
|
|
| T |
18180249 |
tggttgatctttgtgttcaaacagctatagataatttaagataccttggaaatgttggtcctgttgatcatcatctgcttgaacgaatcttgccacactg |
18180150 |
T |
|
| Q |
342 |
cacacttgatcagttgatgcatattgagaag |
372 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| |
|
|
| T |
18180149 |
cacacttgaccagttgacgcatatcgagaag |
18180119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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