View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_1 (Length: 988)
Name: NF17351_low_1
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 41 - 596
Target Start/End: Complemental strand, 5135560 - 5135004
Alignment:
| Q |
41 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacagga |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
5135560 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtattatgagttataacattcatatgtcttctaacaaattggacagga |
5135461 |
T |
|
| Q |
139 |
cagtcttcaacctagtgtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatactt |
238 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135460 |
cagtcttcaacctagtttagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatactt |
5135361 |
T |
|
| Q |
239 |
gaaacggttgatcagtttttgaaagggggtatgtgctcaccataaatctttccttgattgcgattattgacaagagattatttagctcaatgtgggacag |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
5135360 |
gaaacggttgatcagtttttgaaagggggtaagtgcccaccataaatctttccttgattgcgataattgacaagacattatttagctcaatgtgggacag |
5135261 |
T |
|
| Q |
339 |
ttttgctaccttcctctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaaga |
438 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135260 |
ttatgctaccttcctctccaattcacaattaggg-gtactctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaaga |
5135162 |
T |
|
| Q |
439 |
ggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactat |
538 |
Q |
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| T |
5135161 |
ggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactat |
5135062 |
T |
|
| Q |
539 |
gtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag |
596 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5135061 |
gtactgagtggtgactaacagtgtcatagtcgtgattcgggttaaaagctgcttatag |
5135004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 5100326 - 5099736
Alignment:
| Q |
1 |
tcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatg |
100 |
Q |
| |
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|||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5100326 |
tcataactttattttttagtaaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatg |
5100227 |
T |
|
| Q |
101 |
agttataacattcat--gtcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagttcattcaccataacatttgtctctaaggttgt |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
5100226 |
agttataacattcatatgtcttttaacaaattggacaggacagtcttcaacctagtttagcaatgtgttcattcaccataacatttgtctctaaggttgt |
5100127 |
T |
|
| Q |
199 |
gacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagtttttgaaaggggg-tatgtgctcaccataaatctttccttgatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |
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|
| T |
5100126 |
gacttcttacttttcaccaatatgttggatatgaatacttgaaacggttgatcagtttttgaaagggggttaagtgcccaccataaatctttccttgatt |
5100027 |
T |
|
| Q |
298 |
gcgattattgacaagagattatttagctcaatgtgggacagttttgctaccttcctctccaattcacaattagggcacaccctaaactagttgaatgagt |
397 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||||| || |||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
5100026 |
gcgattattgacaagagagtattt-gctcaatgtaggagagttatgctaccttccacttcaattcacaattagtg--caccctaaactagttgaatgagt |
5099930 |
T |
|
| Q |
398 |
gtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcagaaaccatgggagacag---catcctgatactgaaatgtg------att |
488 |
Q |
| |
|
|||| ||||||||| |||||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
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|
| T |
5099929 |
gtgcggtttggaagccaccaagggg--------------gaggagtttgcagaaaccatgggaggcagcatcatcctgatactgaaatgtgatgcgtatt |
5099844 |
T |
|
| Q |
489 |
ataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagct |
588 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5099843 |
ataagttgtattaggcgacgctaaaagctgaataatctggcttcaactatgtacttagtggtggctaacagtgtcatagtcgtgattcgggttaaaagct |
5099744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 315 - 594
Target Start/End: Original strand, 5057851 - 5058132
Alignment:
| Q |
315 |
attatttagctcaatgtgggacagttttgctaccttcctctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtca |
414 |
Q |
| |
|
||||||| | |||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
5057851 |
attattttggtcaatgtgggacagatatactaccttccactccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagcca |
5057950 |
T |
|
| Q |
415 |
ccaaggagtaagctgcacagaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtg------attataagttg-------catta |
501 |
Q |
| |
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||||| |||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
5057951 |
ccaagaagtaggctgcac----------tttgcagaaaccatgggtggcagcatcctgatactgaaatgtgctgcatattataagtcgcctgtcacatta |
5058040 |
T |
|
| Q |
502 |
ggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttat |
594 |
Q |
| |
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|| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||| ||| |||||||||||| |
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| T |
5058041 |
ggtgacgataaaagctgaacaatctggcttcaactatgtatttagtggtggctaacagtgtcataatcgtgactggagtt-aaagctgcttat |
5058132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2939558 - 2939723
Alignment:
| Q |
1 |
tcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatg |
100 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||| ||||||||| |||| | ||||| || ||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
2939558 |
tcataaccttatttttgagtaaacatttattttggtccctaacagtgt--gtcgctcacactatagaccctgaatgatcagctatttgaaccatactacg |
2939655 |
T |
|
| Q |
101 |
agttataacattcatg-tcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagtt |
167 |
Q |
| |
|
|| ||||||||| ||| | ||||||||||||| ||||||||| |||||| ||||| ||| ||| |||| |
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|
| T |
2939656 |
agctataacatttatgtttttttaacaaattgcacaggacagacttcaatctagtttagtaataagtt |
2939723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 5242065 - 5241981
Alignment:
| Q |
2 |
cataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatt |
86 |
Q |
| |
|
||||||||||| ||||| | |||| ||||||| |||||||| |||| |||| |||||| ||||| || |||||||||||||||| |
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|
| T |
5242065 |
cataactttatttttgattgaacaattattttggtccctaatagtgtgaggcactctcactatagtccttgaatgatcagctatt |
5241981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 593 - 707
Target Start/End: Original strand, 30975250 - 30975364
Alignment:
| Q |
593 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaatcgccaaacattactttaaatctcaggcaaccagtgac |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| |
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|
| T |
30975250 |
atagttggtatcattcaaatgagattaatgaaaataaagcaaagaaaaaatgaataacagaataactaaaaattactttaaatctaaggcaaccagtgac |
30975349 |
T |
|
| Q |
693 |
atcaaatttcgaagg |
707 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
30975350 |
atcaaatttcaaagg |
30975364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 723 - 765
Target Start/End: Original strand, 30975414 - 30975456
Alignment:
| Q |
723 |
actctcaattattcaaaatagccaaccaactatacacactata |
765 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
30975414 |
actcacaattgttcaaaatagccaaccaactatacacattata |
30975456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 19909688 - 19909626
Alignment:
| Q |
593 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaat |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
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|
| T |
19909688 |
atagttggtatcattcaaatgagattaatgagaataaagcaaagaaaaaatgaataacagaat |
19909626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 930 - 988
Target Start/End: Complemental strand, 25569341 - 25569283
Alignment:
| Q |
930 |
ccccagcactcaattaatttacacatgaaatctgtaatccactgtctgaaactatattt |
988 |
Q |
| |
|
||||||||||| | |||| |||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
25569341 |
ccccagcactccactaatctacacaagaaatttgcaatccactgtctgaaactatattt |
25569283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 723 - 765
Target Start/End: Original strand, 15856545 - 15856587
Alignment:
| Q |
723 |
actctcaattattcaaaatagccaaccaactatacacactata |
765 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
15856545 |
actcacaattgttcaaaatagccaaccaactatacacattata |
15856587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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