View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_12 (Length: 378)
Name: NF17351_low_12
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 6214758 - 6214400
Alignment:
| Q |
1 |
tactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6214758 |
tactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgccaact |
6214659 |
T |
|
| Q |
101 |
ataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaatatcactttctt |
200 |
Q |
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| T |
6214658 |
ataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaatatcactttctt |
6214559 |
T |
|
| Q |
201 |
tatatgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattc |
300 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6214558 |
tatgtgtaacaatgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataatctcaacaaagtattcaataaattc |
6214459 |
T |
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| Q |
301 |
cttaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaaga |
359 |
Q |
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| T |
6214458 |
cttaaaactacatgtacgtacagcatggcgtccatggtacactggaaaagaggtaaaga |
6214400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 6177239 - 6176895
Alignment:
| Q |
12 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
111 |
Q |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
|
| Q |
112 |
aatatcaagtggtataagcatttggatgtacaggta--ataaagtttataatgtaatat--cacatcaaa----gacattatcaatatcactttctttat |
203 |
Q |
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||||||||||||||||||||| ||||| |||||||| ||| | ||||||| | || | ||||||||| || ||||||||| |||||| |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggtatgatatactttataaattgatctgtcacatcaaaaatagatattatcaatg-------ctttat |
6177047 |
T |
|
| Q |
204 |
atgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattcctt |
303 |
Q |
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| T |
6177046 |
gtctaacattactttgttttgttatc---taataataatgcagtggagatatagatggacgtgttcctataacctcaacaaagtattcaataaattcctt |
6176950 |
T |
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| Q |
304 |
aaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaag |
358 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176949 |
aaaactgcctgtgcatacagcatggcgtccatggtacactggaaaagaggtaaag |
6176895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 236 - 357
Target Start/End: Complemental strand, 6206827 - 6206706
Alignment:
| Q |
236 |
taataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatggcgtccat |
335 |
Q |
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|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
6206827 |
taataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccat |
6206728 |
T |
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| Q |
336 |
ggtacactggaaaagaggtaaa |
357 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6206727 |
ggtacactggaaaagaggtaaa |
6206706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
38 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
137 |
Q |
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|||||||||||||||||||||| | || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
|
| Q |
138 |
tgtacaggta |
147 |
Q |
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| |||||||| |
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| T |
6206925 |
tatacaggta |
6206916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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