View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17351_low_14 (Length: 359)
Name: NF17351_low_14
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_14 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 15016913 - 15017239
Alignment:
| Q |
16 |
tcattgcgcgaattaactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatt |
115 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15016913 |
tcattgcacgaattaactgcattggagcttgcagcaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgaagttaaatt |
15017012 |
T |
|
| Q |
116 |
tgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017013 |
tgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccat |
15017112 |
T |
|
| Q |
215 |
accagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017113 |
accagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagc |
15017212 |
T |
|
| Q |
315 |
ttgacaactgttgatatatcttacaac |
341 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
15017213 |
ttgacaactgttgatgtatcttacaac |
15017239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 15010811 - 15011124
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||||| ||| ||||||| | ||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15010811 |
taactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataa |
15010910 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010911 |
gtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
15011010 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011011 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
15011110 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15011111 |
atatatcttacaac |
15011124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 15001918 - 15002231
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||||| ||| ||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15001918 |
taactgcattggagcttgcaacaaataatttgagtggattcatccctgaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataa |
15002017 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002018 |
gtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
15002117 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002118 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctaaagctttgttgatatgttaagcttgacaactgttg |
15002217 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15002218 |
atatatcttacaac |
15002231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 15036831 - 15037144
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||||| ||| ||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15036831 |
taactgcattggagcttgcaacaaataacttaagtggcttcatcctggaaaaacttggtatgttgtctaggttattgcagttgaatttgagccataataa |
15036930 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036931 |
gcttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
15037030 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037031 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattcccttaagctttgttgatatgttaagcttgacaactgttg |
15037130 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15037131 |
atatatcttacaac |
15037144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 15032256 - 15032582
Alignment:
| Q |
16 |
tcattgcgcgaattaactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatt |
115 |
Q |
| |
|
||||||| ||| ||||||| ||| ||||||| ||||||| ||| ||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15032256 |
tcattgcacgagctaactgcattggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatt |
15032355 |
T |
|
| Q |
116 |
tgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15032356 |
tgagccaaaataagtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccat |
15032455 |
T |
|
| Q |
215 |
accagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagc |
314 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032456 |
accatcaatgcttgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagc |
15032555 |
T |
|
| Q |
315 |
ttgacaactgttgatatatcttacaac |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15032556 |
ttgacaactgttgatatatcttacaac |
15032582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 15024915 - 15025237
Alignment:
| Q |
16 |
tcattgcgcgaattaactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatt |
115 |
Q |
| |
|
||||||| ||| ||||||| ||| ||||||| ||||||| ||| ||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15024915 |
tcattgcacgagctaactgcattggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatt |
15025014 |
T |
|
| Q |
116 |
tgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15025015 |
tgagccaaaataagtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccat |
15025114 |
T |
|
| Q |
215 |
accagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagc |
314 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025115 |
accatcaatgcttgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagc |
15025214 |
T |
|
| Q |
315 |
ttgacaactgttgatatatctta |
337 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15025215 |
ttgacaactgttgatatatctta |
15025237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 43 - 341
Target Start/End: Complemental strand, 14522911 - 14522612
Alignment:
| Q |
43 |
cttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgaggggaaca |
142 |
Q |
| |
|
||||| ||||||| ||| ||||| || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
14522911 |
cttgcaacaaataatttaagtggttttatccctgaaaaacttggaaggttgtctaggttattgcagttgaatttgagccaaaataagtttgaaggaaaca |
14522812 |
T |
|
| Q |
143 |
ttcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatca |
241 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
14522811 |
ttcctgttgaacttggtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagttaaatcg |
14522712 |
T |
|
| Q |
242 |
cttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaac |
341 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14522711 |
cttagaaacattgaatctctcacataataatctctatggtaacattcccttaagcttttttgatatgttaagtttgacaactgttgatatatcttacaac |
14522612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 14503793 - 14504106
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||| ||||| ||||||| ||||||| ||| ||||||||||||||| || |||||| | ||||||| |||| | || || ||||||||||||||||| |
|
|
| T |
14503793 |
taactaccttggagcttgcaacaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataa |
14503892 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
|||||| || |||||||| ||| ||||||||| ||| |||||||||||| |||||||||| ||||| |||| |||||||||||| ||||| ||||| || |
|
|
| T |
14503893 |
gtttgaaggaaacattcccgttgagtttggccgattaaatgttattgaagatcttgatctcagtggaaattttatgaatggaacgataccttcaatgttt |
14503992 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||| |||| || |||||||||||||||||||| | ||| |
|
|
| T |
14503993 |
ggagtgttaaatcatttagaaacattgaatctctcacataataatctgtctggtacgatcccctttagctctggtgatatgttaagcttgacaattattg |
14504092 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
14504093 |
atatatcatacaac |
14504106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 14467684 - 14467927
Alignment:
| Q |
99 |
gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaat |
197 |
Q |
| |
|
|||||| || || ||||| ||| |||||| |||||| || ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||| |||| |
|
|
| T |
14467684 |
gttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaat |
14467783 |
T |
|
| Q |
198 |
tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagct |
297 |
Q |
| |
|
| | |||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||| |
|
|
| T |
14467784 |
tttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaatctctcacataataatctttctggtaccattctcttcagct |
14467883 |
T |
|
| Q |
298 |
ttgttgatatgttaagcttgacaactgttgatatatcttacaac |
341 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
14467884 |
cagttgatatgttaagcttgacaactgtagatatatcgtacaac |
14467927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 29 - 341
Target Start/End: Complemental strand, 14533046 - 14532733
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||||||||| |||||| | ||||| ||| ||||||||||||||| || |||||| | ||||||| |||| | || || ||||||||||||||||| |
|
|
| T |
14533046 |
taactgccttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataa |
14532947 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
||| || || |||||||||||| |||||| |||||| || ||||||||| ||||||||||||||| ||| ||||| ||||||||||||| |||||||| |
|
|
| T |
14532946 |
gttcgaaggaaacattcctgttgagtttgaccaattaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgctt |
14532847 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| ||||| |
|
|
| T |
14532846 |
ggacagttaaatcacttacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttg |
14532747 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
14532746 |
atatatcatacaac |
14532733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 14481866 - 14482109
Alignment:
| Q |
99 |
gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaat |
197 |
Q |
| |
|
|||||| || || ||||| ||| |||||| |||||| || ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||| |||| |
|
|
| T |
14481866 |
gttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaat |
14481965 |
T |
|
| Q |
198 |
tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagct |
297 |
Q |
| |
|
| | |||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || | |
|
|
| T |
14481966 |
tttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaatctctcacataataatctttctggtaccattcccttcagat |
14482065 |
T |
|
| Q |
298 |
ttgttgatatgttaagcttgacaactgttgatatatcttacaac |
341 |
Q |
| |
|
|| | | ||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
14482066 |
atggttagatgttaagcttgataactgtagatatatcgtacaac |
14482109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 15040577 - 15040801
Alignment:
| Q |
36 |
cttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgag |
135 |
Q |
| |
|
|||| |||| || ||||||| ||| ||||||||| |||| || ||||||| | || |||| |||||| || |||||| ||||||||||||||||||| |
|
|
| T |
15040577 |
cttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaa |
15040676 |
T |
|
| Q |
136 |
gggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagt |
234 |
Q |
| |
|
|| |||||||||| | || |||| || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
15040677 |
ggaaacattcctgatgagattggacagttaaaagttattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagt |
15040776 |
T |
|
| Q |
235 |
taaatcacttagaaacattgaatct |
259 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
15040777 |
taaatcgcttagaaacattgaatct |
15040801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 36 - 341
Target Start/End: Original strand, 6309 - 6615
Alignment:
| Q |
36 |
cttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgag |
135 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||| ||| ||||||| | || ||| |||||| | || ||||||||||||||||||||||| |
|
|
| T |
6309 |
cttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaa |
6408 |
T |
|
| Q |
136 |
gggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagt |
234 |
Q |
| |
|
|| ||||||||| | ||||||| |||||||| |||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||| ||| |
|
|
| T |
6409 |
ggagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagt |
6508 |
T |
|
| Q |
235 |
taaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatc |
334 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||| | || || ||| |||| |||||| |||||| |||||||||| |
|
|
| T |
6509 |
taaatcgcttagaaacattgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatc |
6608 |
T |
|
| Q |
335 |
ttacaac |
341 |
Q |
| |
|
|||||| |
|
|
| T |
6609 |
atacaac |
6615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 12590 - 12903
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||||||||| |||||| | ||||| ||| ||||||||||||||| || |||||| | ||||||| |||| | || || |||||||||||||||| |
|
|
| T |
12590 |
taactgccttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaatag |
12689 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
|||||| || |||||||| || ||||||||||||| | ||||||||| ||||||| |||||||| |||| | |||| |||||||||||| |||||||| |
|
|
| T |
12690 |
gtttgaaggaaacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgctt |
12789 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|| |||||||||||| || ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| ||||| |
|
|
| T |
12790 |
ggacagttaaatcacatacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttg |
12889 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
12890 |
atatatcatacaac |
12903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 36 - 341
Target Start/End: Original strand, 6953 - 7259
Alignment:
| Q |
36 |
cttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgag |
135 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||| ||| ||||||| | || ||| |||||| | || ||||||||||||||||||||||| |
|
|
| T |
6953 |
cttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaa |
7052 |
T |
|
| Q |
136 |
gggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagt |
234 |
Q |
| |
|
|| ||||||||| | ||||||| |||||||| |||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||| ||| |
|
|
| T |
7053 |
ggagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagt |
7152 |
T |
|
| Q |
235 |
taaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatc |
334 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||| | || || ||| |||| |||||| |||||| |||||||||| |
|
|
| T |
7153 |
taaatcgcttagaaacattgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatc |
7252 |
T |
|
| Q |
335 |
ttacaac |
341 |
Q |
| |
|
|||||| |
|
|
| T |
7253 |
atacaac |
7259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 13233 - 13546
Alignment:
| Q |
29 |
taactgccttgcagcttgccacaaatactttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataa |
128 |
Q |
| |
|
||||||||||| |||||| | ||||| ||| ||||||||||||||| || |||||| | ||||||| |||| | || || |||||||||||||||| |
|
|
| T |
13233 |
taactgccttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaatag |
13332 |
T |
|
| Q |
129 |
gtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
|||||| || |||||||| || ||||||||||||| | ||||||||| ||||||| |||||||| |||| | |||| |||||||||||| |||||||| |
|
|
| T |
13333 |
gtttgaaggaaacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgctt |
13432 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttg |
327 |
Q |
| |
|
|| |||||||||||| || ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| ||||| |
|
|
| T |
13433 |
ggacagttaaatcacatacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttg |
13532 |
T |
|
| Q |
328 |
atatatcttacaac |
341 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
13533 |
atatatcatacaac |
13546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 334
Target Start/End: Original strand, 16102867 - 16102997
Alignment:
| Q |
204 |
aatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttg |
303 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| ||||| |||||||| ||||||| | |
|
|
| T |
16102867 |
aatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggctttattccctctagctttgatc |
16102966 |
T |
|
| Q |
304 |
atatgttaagcttgacaactgttgatatatc |
334 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| |
|
|
| T |
16102967 |
aaatgttaagcttgacatctgttgatatatc |
16102997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 334
Target Start/End: Original strand, 14605834 - 14606015
Alignment:
| Q |
153 |
tttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacat |
252 |
Q |
| |
|
||||| ||||| ||||| |||||| || ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
14605834 |
tttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacat |
14605933 |
T |
|
| Q |
253 |
tgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatc |
334 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||||||| ||||| | | | ||||| ||||| ||| ||||||||||||| |
|
|
| T |
14605934 |
tgaatatctcacataataatctttctggttttattccctctagcttcgatcagatgttcagcttaacatctgttgatatatc |
14606015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 334
Target Start/End: Original strand, 16025011 - 16025192
Alignment:
| Q |
153 |
tttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacat |
252 |
Q |
| |
|
||||| ||||| ||||| |||||| || ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
16025011 |
tttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacat |
16025110 |
T |
|
| Q |
253 |
tgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatc |
334 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||||||| ||||| | | | ||||| ||||| || ||||||||||||| |
|
|
| T |
16025111 |
tgaatatctcacataataatctttctggttttattccctctagcttcgatcagatgttcagcttaacgtctgttgatatatc |
16025192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 16172520 - 16172620
Alignment:
| Q |
180 |
cttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||||||| ||||| |||| | | |||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
16172520 |
cttgatctgagtggaaattttttaaatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctg |
16172619 |
T |
|
| Q |
280 |
g |
280 |
Q |
| |
|
| |
|
|
| T |
16172620 |
g |
16172620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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