View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17351_low_15 (Length: 339)

Name: NF17351_low_15
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17351_low_15
NF17351_low_15
[»] chr1 (8 HSPs)
chr1 (127-323)||(32041963-32042159)
chr1 (34-115)||(5426222-5426303)
chr1 (34-116)||(47134709-47134791)
chr1 (34-116)||(16300394-16300476)
chr1 (51-116)||(38894760-38894825)
chr1 (51-116)||(43116053-43116118)
chr1 (34-83)||(52306107-52306156)
chr1 (47-99)||(1367313-1367365)
[»] chr3 (10 HSPs)
chr3 (34-127)||(53800493-53800586)
chr3 (34-116)||(26777850-26777932)
chr3 (37-116)||(4139350-4139429)
chr3 (34-116)||(8393568-8393650)
chr3 (34-116)||(19895645-19895727)
chr3 (34-101)||(18682509-18682576)
chr3 (69-116)||(39838218-39838265)
chr3 (34-99)||(22519211-22519276)
chr3 (34-99)||(19368941-19369006)
chr3 (51-128)||(35855197-35855274)
[»] chr8 (7 HSPs)
chr8 (34-129)||(25616497-25616593)
chr8 (34-122)||(7389197-7389285)
chr8 (34-116)||(4466420-4466502)
chr8 (34-110)||(25620714-25620790)
chr8 (41-125)||(45298259-45298343)
chr8 (34-112)||(41972965-41973043)
chr8 (51-99)||(40587709-40587757)
[»] chr4 (8 HSPs)
chr4 (34-122)||(46104178-46104266)
chr4 (34-116)||(2116094-2116176)
chr4 (34-116)||(12682755-12682837)
chr4 (51-109)||(35833430-35833488)
chr4 (34-100)||(3821198-3821264)
chr4 (34-101)||(5752471-5752538)
chr4 (34-116)||(15704116-15704198)
chr4 (34-99)||(39716717-39716782)
[»] scaffold0051 (1 HSPs)
scaffold0051 (34-116)||(62067-62149)
[»] chr6 (7 HSPs)
chr6 (34-116)||(4107959-4108041)
chr6 (34-116)||(28573828-28573910)
chr6 (34-116)||(6969295-6969377)
chr6 (41-115)||(34316957-34317031)
chr6 (34-110)||(9981259-9981335)
chr6 (51-125)||(18394687-18394761)
chr6 (34-99)||(15045546-15045611)
[»] chr7 (10 HSPs)
chr7 (34-116)||(49146122-49146205)
chr7 (34-116)||(4848353-4848436)
chr7 (51-111)||(46197427-46197487)
chr7 (34-116)||(688068-688150)
chr7 (46-128)||(42912125-42912207)
chr7 (34-99)||(11840447-11840512)
chr7 (34-99)||(21600970-21601035)
chr7 (34-99)||(39651148-39651213)
chr7 (34-100)||(9143497-9143563)
chr7 (34-99)||(39276635-39276700)
[»] chr5 (8 HSPs)
chr5 (35-128)||(12422345-12422438)
chr5 (34-116)||(34727334-34727417)
chr5 (49-123)||(43352918-43352992)
chr5 (34-100)||(3088031-3088097)
chr5 (34-116)||(33709813-33709895)
chr5 (35-116)||(22693723-22693804)
chr5 (34-99)||(25698717-25698782)
chr5 (34-99)||(30140524-30140589)
[»] scaffold0759 (1 HSPs)
scaffold0759 (34-116)||(5891-5973)
[»] chr2 (6 HSPs)
chr2 (34-133)||(28607209-28607308)
chr2 (34-99)||(10050189-10050254)
chr2 (51-79)||(1693995-1694023)
chr2 (47-99)||(2952779-2952831)
chr2 (47-99)||(9545788-9545840)
chr2 (37-125)||(18096487-18096575)
[»] scaffold0009 (1 HSPs)
scaffold0009 (37-99)||(225457-225519)
[»] scaffold0057 (1 HSPs)
scaffold0057 (47-99)||(20592-20644)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 127 - 323
Target Start/End: Original strand, 32041963 - 32042159
Alignment:
127 attaaatacactttgctaaatgctggttgttattgtgcacaaaatagaaaccaatgcattcaattctattccaactagaaattgcaaagctgtaaccaac 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
32041963 attaaatacactttgctaaatgctggttgttattgtgcacaaaatagaaaccaatgcattcaattctattccaactataaattgcaaagctgtaaccaac 32042062  T
227 caaccatcaatgttttctgtccagtttatgtagtacaattgtagtagttagtagtagtacttagttgcacatttttggtacaaatatcttttgtagt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32042063 caaccatcaatgttttctgtccagtttatgtagtacaattgtagtagttagtagtagtacttagttgcacatttttggtacaaatatcttttgtagt 32042159  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 5426303 - 5426222
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagta 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
5426303 ctcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacattaactgttatattagta 5426222  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 47134791 - 47134709
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||| |||||||||||||||||||||  || |||||||||||| || ||||||||||||| ||||||||| |||||    
47134791 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtat 47134709  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 16300476 - 16300394
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||| |||||||||||||||||||||  || | |||||||||| || |||| ||||||||| ||| |||| |||||    
16300476 ctcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacattaattttaatataagtat 16300394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 38894825 - 38894760
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||||||||  || |||||||||||| || |||||||||||| |||||  |||||||||    
38894825 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttactttcttattagtat 38894760  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 43116118 - 43116053
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||||||||||| ||||||||| |  || |||||||||||  | ||||||||||||||    
43116118 ttaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtat 43116053  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 52306156 - 52306107
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggt 83  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||||||    
52306156 ctcaaccaattagtaatttatcaaattgccccttataggggcaaaatggt 52306107  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 1367365 - 1367313
Alignment:
47 taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||||||||||||  || |||||||||||| || |||| |||||||    
1367365 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 1367313  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 53800586 - 53800493
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatataga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
53800586 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggtaaaatcaatggacattaacttttatattagtattagtatataga 53800493  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 26777850 - 26777932
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||    
26777850 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacgttaacttttatattagtat 26777932  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 4139350 - 4139429
Alignment:
37 aaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||||||||||||||||||||||  || || ||||||||| ||||||||||||||||||||||||||||||||    
4139350 aaccaatttgtaatttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacattaacttttatattagtat 4139429  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 8393650 - 8393568
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||| | ||||||||||||||||||||||||  || |||||||||||| || |||| ||||||||||||||||||||||||    
8393650 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtat 8393568  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 19895645 - 19895727
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||  |||||||||||||||||| |  ||||||||||||||| || ||||||||||||  ||| ||||| |||||    
19895645 ctcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacattttcttctatataagtat 19895727  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 18682576 - 18682509
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaa 101  Q
    |||||| | ||||||||||||||||||||||||  || |||||||||||| || |||| |||||||||    
18682576 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaa 18682509  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 39838218 - 39838265
Alignment:
69 taagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||    
39838218 taagggtaaaatggtaaaatcaacggacattaacttttatattagtat 39838265  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 22519276 - 22519211
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    |||||||||||  |||||||| |||||||||||  || |||||||||||| || ||||||||||||    
22519276 ctcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggacatt 22519211  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19368941 - 19369006
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||  |||  ||||||||||||||||  || |||||||||||| ||||||| |||||||    
19368941 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaaatcaagggacatt 19369006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 35855274 - 35855197
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagat 128  Q
    ||||||||||||||||  || |||||||||||| || | || |||||||   |||  |||||||||||||||||||||    
35855274 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatttcttttcttattagtattagtatatagat 35855197  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 25616497 - 25616593
Alignment:
34 ctcaaccaattt-gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagatt 129  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
25616497 ctcaaccaattttgtaatttaccaaattgcccctcttaagggcaaaatggtaaaatcaatggacattaacttttatattagtattagtatatagatt 25616593  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 7389285 - 7389197
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtat 122  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
7389285 ctcaaccaatttgtaatttaccaaattgcccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtattagtat 7389197  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 4466420 - 4466502
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
4466420 ctcaaccaatttgtaatttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtat 4466502  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 25620714 - 25620790
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatat 110  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||| || |||||||||||||| |||||||||||    
25620714 ctcaactaatttgtaatttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacatgaacttttatat 25620790  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 45298259 - 45298343
Alignment:
41 aatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatata 125  Q
    |||| |||| ||||||||||||||||| || ||| |||| ||| ||||||||| |||| |  |||||||||||||||||||||||    
45298259 aattagtaaattaccaaattgcccctcttaggggtaaaaaggtaaaatcaatgtacatcattttttatattagtattagtatata 45298343  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 41973043 - 41972965
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatatta 112  Q
    ||||||||||| |||  ||||||||||||||||  || |||||||||||| || |||| ||||||| | ||||||||||    
41973043 ctcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttaattttatatta 41972965  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 40587709 - 40587757
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||||||||  || |||||||||||| || ||||||||||||    
40587709 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 40587757  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 46104266 - 46104178
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtat 122  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
46104266 ctcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaatggacattaacttttatattagtattagtat 46104178  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 2116176 - 2116094
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
2116176 ctcaaccaatttataatttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtat 2116094  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 12682755 - 12682837
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||    
12682755 ctcaaccaatttataatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 12682837  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35833430 - 35833488
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttata 109  Q
    ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||    
35833430 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttata 35833488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 3821198 - 3821264
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatta 100  Q
    ||||||||||| |||||||||||||||||||||  || |||||||||||| || |||| ||||||||    
3821198 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatta 3821264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 5752538 - 5752471
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaa 101  Q
    |||||| | ||||||||||||||||||||||||  || |||||||||||| || |||| |||||||||    
5752538 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaa 5752471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 15704198 - 15704116
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||| ||||||||||||||| |||||  || |||||||||||| || | || | ||||||  |||||||| |||||    
15704198 ctcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatttaaagaacattactttttatataagtat 15704116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 39716717 - 39716782
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||   ||||||||||||||||||||  || |||||||||||| || |||| |||||||    
39716717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 39716782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 62149 - 62067
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||    
62149 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 62067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 4108041 - 4107959
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||    
4108041 ctcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtat 4107959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 28573828 - 28573910
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| |||||    
28573828 ctcaaccaatttgtaatttaccaaattgcccctcctaggggcaaaatggtaaaatcaaaggatattaacttttatatcagtat 28573910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 6969295 - 6969377
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||| | ||||||||||||||||||||||||  || |||||||||||| || |||| ||||||||||||||||||||||||    
6969295 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaacttttatattagtat 6969377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 34317031 - 34316957
Alignment:
41 aatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagta 115  Q
    |||| |||| ||||||||||||||||| || |||||||| ||| |||||||||||||| |  |||||||||||||    
34317031 aattagtaaattaccaaattgcccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagta 34316957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 9981259 - 9981335
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatat 110  Q
    ||||||||||| | |||||||||||||||||||  || ||| |||||||| || |||||| |||||  |||||||||    
9981259 ctcaaccaattagcaatttaccaaattgccccttataggggtaaaatggtaaattcaatgaacatttccttttatat 9981335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 18394687 - 18394761
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatata 125  Q
    ||||||||||||||||| | |||||||||  | ||| |||  ||||||||| |||  ||||||||||||||||||    
18394687 ttaccaaattgcccctcttgagggcaaaaatggtaattcataggacattaattttcttattagtattagtatata 18394761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 15045546 - 15045611
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    |||||| |||||||||||||||||||| ||| |  || |||||||||||| || |||| |||||||    
15045546 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatt 15045611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 49146122 - 49146205
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaac-ttttatattagtat 116  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||    
49146122 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaactttttatattagtat 49146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 4848436 - 4848353
Alignment:
34 ctcaaccaattt-gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||| ||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||||||    
4848436 ctcaaccaattttgtaatttaccaaattacccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 4848353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 46197487 - 46197427
Alignment:
51 ttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatatt 111  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
46197487 ttaccaaattgcctctcctaagggcaaaatggtaaaatcaatggacattaacttttatatt 46197427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 688150 - 688068
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||| | ||||||||||||||||||||||||  || |||||||||||| || |||| ||||||||||||||||||||||||    
688150 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtat 688068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 42912207 - 42912125
Alignment:
46 gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagat 128  Q
    |||| ||| ||||||||||||| ||||||||||| ||| |||||||||||||| |  ||||||| ||||| ||||||||||||    
42912207 gtaaattagcaaattgcccctcttaagggcaaaaaggtaaaatcaatggacatcactttttatactagtactagtatatagat 42912125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 11840447 - 11840512
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    |||||||||||  ||||||||||||||||||||  || |||||||||||| || ||||||||||||    
11840447 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 11840512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 21600970 - 21601035
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    |||||||||||  ||||||||||||||||||||  || |||||||||||| || ||||||||||||    
21600970 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 21601035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 39651148 - 39651213
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||| |||||||||||||||||||||  || |||||||||||| || |||| |||||||    
39651148 ctcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 39651213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 9143563 - 9143497
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatta 100  Q
    |||||| |||| |||||||||||||||||||||  || |||||||||||| || |||| ||| ||||    
9143563 ctcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggatatta 9143497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 39276700 - 39276635
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    |||||| |||||||||||||||||||| ||| |  || |||||||||||| || |||| |||||||    
39276700 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatt 39276635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 12422345 - 12422438
Alignment:
35 tcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatatagat 128  Q
    |||||||||| |||  ||||||||||||||||  || |||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||    
12422345 tcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacatgaatttttatattagtattagtatatagat 12422438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 34727334 - 34727417
Alignment:
34 ctcaaccaattt-gtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||| |||||||| ||||||||| || |||| | ||||||||| ||||||||||||||||||||||||||||||||    
34727334 ctcaaccaattttgtaatttatcaaattgcctcttctaaagacaaaatggtaaaatcaatggacattaacttttatattagtat 34727417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 43352992 - 43352918
Alignment:
49 atttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtata 123  Q
    ||||||||||||||||||||||  |||||||| |  || |||||||||||  | |||||||||||||||||||||    
43352992 atttaccaaattgcccctcctataggcaaaattggaaattcaatggacatgtatttttatattagtattagtata 43352918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 3088031 - 3088097
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatta 100  Q
    |||||||||||  ||||||||||||||||||||  || |||||||||||| || |||| ||||||||    
3088031 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacatta 3088097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 33709813 - 33709895
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||||  |||||||||||||||||| |  || ||| |||||||| || |||| ||||||||| ||| |||| |||||    
33709813 ctcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacattaattttaatataagtat 33709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 22693804 - 22693723
Alignment:
35 tcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||||||| |||| ||| |||| | |||||||| |||||||||| |  |||||||| |||||  | ||||||||||||||    
22693804 tcaaccaattagtaaattatcaaaatacccctcctgagggcaaaattggaaaatcaatagacatctatttttatattagtat 22693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 25698717 - 25698782
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||   ||||||||||||||||||||  || |||||||||||| || |||| |||||||    
25698717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 25698782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 30140589 - 30140524
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||| ||||||||||||||| ||| |  || |||||||||||| || |||| |||||||    
30140589 ctcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatt 30140524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 5891 - 5973
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat 116  Q
    |||||| | ||||||||||||||||||||||||  || |||||||||||| || |||  ||||||||||||||||||||||||    
5891 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttttatattagtat 5973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 28607308 - 28607209
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtat-tagtatatagattaaa 132  Q
    |||||||||||||||||||||||||||||||||  || || ||||||||| || |||||||||||| | ||| |||| ||||| ||| ||||||||||||    
28607308 ctcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtatatag-atatagattaaa 28607210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 10050189 - 10050254
Alignment:
34 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||| |||||||| ||||||||||||  || |||||||||||| || |||| |||||||    
10050189 ctcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 10050254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 1693995 - 1694023
Alignment:
51 ttaccaaattgcccctcctaagggcaaaa 79  Q
    |||||||||||||||||||||||||||||    
1693995 ttaccaaattgcccctcctaagggcaaaa 1694023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 2952831 - 2952779
Alignment:
47 taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||||||||||||  || |||||||||||| || |||| |||||||    
2952831 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 2952779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 9545788 - 9545840
Alignment:
47 taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||||||||||||  || |||||||||||| || |||| |||||||    
9545788 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 9545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 18096575 - 18096487
Alignment:
37 aaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacattaacttttatattagtattagtatata 125  Q
    ||||||||  |||||| ||||||| |||||  || |||||||||||| || |||| |||||||   |||||||| ||||| ||||||||    
18096575 aaccaattaataatttgccaaattaccccttataggggcaaaatggtaaattcaaaggacatttctttttatataagtataagtatata 18096487  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 225519 - 225457
Alignment:
37 aaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    |||||||| |||||||||||||||||||||  || |||||||||||| || ||||||||||||    
225519 aaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 225457  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 20592 - 20644
Alignment:
47 taatttaccaaattgcccctcctaagggcaaaatggttaaatcaatggacatt 99  Q
    ||||||||||||||||||||  || |||||||||||| || |||| |||||||    
20592 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 20644  T

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