View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_21 (Length: 308)
Name: NF17351_low_21
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 52711045 - 52711342
Alignment:
| Q |
1 |
acggacaatagaaggctccatactataaacacaaaaatgtttagtcaacggcaatctgaccatgattgcgaaagaaaactacaatgttatgtcacaatca |
100 |
Q |
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| T |
52711045 |
acggacaatagaaggctccatactataaatacaaaaatgtttagtcaacggcaatctgaccatgattgcgaaagaaaactacaatgt-----cacaatca |
52711139 |
T |
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| Q |
101 |
aattattaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacc |
200 |
Q |
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| T |
52711140 |
aattattaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacc |
52711239 |
T |
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| Q |
201 |
caaataaaaat----gatgaccttgcctgattgagacgctttcttccactctgctaacctatataaaatgcaaaattagtgttacttttcatttcatctc |
296 |
Q |
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| T |
52711240 |
caaataaaaatgatggatgaccttgcctgattgagacgctttcttacactctgctaacctatataaaatgcaaaattagtgttacttttcatttcatctc |
52711339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 105 - 299
Target Start/End: Original strand, 52720012 - 52720203
Alignment:
| Q |
105 |
attaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacccaaa |
204 |
Q |
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| T |
52720012 |
attaataccctaaatgcctgtgaagcctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccataaatcaactgtaacccaaa |
52720111 |
T |
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| Q |
205 |
taaaaatgatgaccttgcctgattgagacgctttcttccactctgctaacctatataaaatgcaaaattagtgttacttttcatttcatctcact |
299 |
Q |
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| T |
52720112 |
taaaa---atgaccctgcctgatcgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatttcatctcact |
52720203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 52718054 - 52718132
Alignment:
| Q |
9 |
tagaaggctccatactataaacacaaaaatgtttagtcaacggcaatctgaccatgattgcgaaagaaaactacaatgt |
87 |
Q |
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| T |
52718054 |
tagaaagccccatactataaatataaaaatgattagtcaacggtaatctgaccatgattgcgaaagaaaactacaatgt |
52718132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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