View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17351_low_23 (Length: 306)

Name: NF17351_low_23
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17351_low_23
NF17351_low_23
[»] chr8 (2 HSPs)
chr8 (1-306)||(294243-294548)
chr8 (191-252)||(4561103-4561164)
[»] chr4 (2 HSPs)
chr4 (214-252)||(46676699-46676737)
chr4 (209-252)||(17912817-17912860)
[»] scaffold0167 (1 HSPs)
scaffold0167 (211-252)||(23493-23534)
[»] chr2 (2 HSPs)
chr2 (216-252)||(10084306-10084342)
chr2 (191-240)||(40149015-40149064)
[»] chr1 (4 HSPs)
chr1 (214-253)||(13031125-13031164)
chr1 (213-252)||(31626239-31626278)
chr1 (198-252)||(19809943-19809997)
chr1 (207-253)||(21641404-21641450)
[»] chr6 (1 HSPs)
chr6 (198-244)||(15544484-15544530)
[»] chr5 (2 HSPs)
chr5 (214-252)||(15844510-15844548)
chr5 (207-253)||(22198985-22199031)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 294243 - 294548
Alignment:
Q  1 tacagaaccaatcagaaatcaacaattcttcaagaagctaaagttgttgcatgttaagtaaagccgcatggatggcttaaatttaaaacaataacgctcc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  294243 tacagaacaaatcagaaatcaacaattcttcaagaagctaaagttgttgcatgttaagtaaagccgcatggatggtttaaatttaaaacaataacgctcc 294342  T
Q  101 cgatctatgaagcaccaacttaaacatagacactgtgaagggtcccacattgaaagagatatcacatgaacatgagtcaataagtgataaacaatcgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294343 cgatctatgaagcaccaacttaaacatagacactgtgaagggtcccacattgaaagagatatcacatgaacatgagtcaataagtgataaacaatcgtca 294442  T
Q  201 cctcacaggccgattttgtaggattgagttaggtccaacccaaattttaagagacactacaccaacgttaacaagccggacatgtgtcgtggccaaataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294443 cctcacaggccgattttgtaggattgagttaggtccaacccaaattttaagagacactacaccaacgttaacaagccggacatgtgtcgtggccaaataa 294542  T
Q  301 ttgaat 306  Q
    ||||||    
T  294543 ttgaat 294548  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 4561164 - 4561103
Alignment:
Q  191 acaatcgtcacctcacaggccgattttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    |||||| |||||| ||| |||||||||||||| | ||||||||| || |||||||| |||||    
T  4561164 acaatcatcacctaacaagccgattttgtagggtagagttaggttcatcccaaattataaga 4561103  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 46676699 - 46676737
Alignment:
Q  214 ttttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  46676699 ttttgtagggttgagttaggtccaacccaaattttaaga 46676737  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 17912817 - 17912860
Alignment:
Q  209 gccgattttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||    
T  17912817 gccggttttgtagggttgagttaggcccaacccaaattttaaga 17912860  T

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Target: scaffold0167 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 23493 - 23534
Alignment:
Q  211 cgattttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  23493 cgattttgtaggattgagttaggtccaactcaatttttaaga 23534  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 10084306 - 10084342
Alignment:
Q  216 ttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10084306 ttgtaggattgagttatgtccaacccaaattttaaga 10084342  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 40149064 - 40149015
Alignment:
Q  191 acaatcgtcacctcacaggccgattttgtaggattgagttaggtccaacc 240  Q
    |||||| |||||||||| ||||||||||| || ||| |||||||||||||    
T  40149064 acaatcctcacctcacaagccgattttgtggggttgtgttaggtccaacc 40149015  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 13031164 - 13031125
Alignment:
Q  214 ttttgtaggattgagttaggtccaacccaaattttaagag 253  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  13031164 ttttgtagggttgagttaggtccaacccaaattctaagag 13031125  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 31626278 - 31626239
Alignment:
Q  213 attttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  31626278 attttgtagggttgagttaggtccaacccaaattctaaga 31626239  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 19809997 - 19809943
Alignment:
Q  198 tcacctcacaggccgattttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    |||||| ||| |||||||||||| | |||||||||| |||||||||| |||||||    
T  19809997 tcaccttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaaga 19809943  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 21641450 - 21641404
Alignment:
Q  207 aggccgattttgtaggattgagttaggtccaacccaaattttaagag 253  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||    
T  21641450 aggccggttttgtaaggttgagttaggcccaacccaaattttaagag 21641404  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 15544530 - 15544484
Alignment:
Q  198 tcacctcacaggccgattttgtaggattgagttaggtccaacccaaa 244  Q
    |||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  15544530 tcacctcacaagccggttttgtaagattcagttaggtccaacccaaa 15544484  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 15844548 - 15844510
Alignment:
Q  214 ttttgtaggattgagttaggtccaacccaaattttaaga 252  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  15844548 ttttgtaagattgagttaggcccaacccaaattttaaga 15844510  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 22199031 - 22198985
Alignment:
Q  207 aggccgattttgtaggattgagttaggtccaacccaaattttaagag 253  Q
    |||||| ||||||| | |||||||||| |||||||||||||||||||    
T  22199031 aggccggttttgtaaggttgagttaggcccaacccaaattttaagag 22198985  T

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