View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_24 (Length: 277)
Name: NF17351_low_24
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 47573643 - 47573377
Alignment:
| Q |
1 |
agaattttatcttttgagctatttctcttgattgttgaaaataagaagaaaactgatattaggggtcactattatgcactacgaatatttgtgtatttga |
100 |
Q |
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| T |
47573643 |
agaattttatcttttgagctatttctcttgattgttgaaaataagaagaaaactgatattaggggtcactattatgcactacgaatatttgtgtatttga |
47573544 |
T |
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| Q |
101 |
ttatgggtggaaatttcctgattcccctctcttctccaaataaacatctttgattgactggaaatatcttcttttatgcttttttcttcatttttctata |
200 |
Q |
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| T |
47573543 |
ttaagggtggaaatttcctgattcccctctcttctccaaataaacatctttgattgactggaaatatcttcttttatgcttttttcttcatttttctata |
47573444 |
T |
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| Q |
201 |
ttccattctatcaaggaagtggttataatgtttagtgtcgttgaaggctataagacaacgtattctt |
267 |
Q |
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| T |
47573443 |
ttccattctatcaaggaagtggttataatgtttagtgttgttgaaggctataagacaacgtattctt |
47573377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 47566411 - 47566305
Alignment:
| Q |
130 |
tcttctccaaataaacatctttgattgactggaaatatcttcttttatgcttttttcttcatttttctatattccattctatcaaggaagtggttataat |
229 |
Q |
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| T |
47566411 |
tcttctcctaataaacatctatgatggattgaaagtattttgttttct--tcttttcctcgtttttctatattccattctatcaaggaagtggttagaat |
47566314 |
T |
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| Q |
230 |
gtttagtgt |
238 |
Q |
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| T |
47566313 |
gtatagtgt |
47566305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 47571040 - 47570980
Alignment:
| Q |
188 |
tcatttttctatattccattctatcaaggaagtggttataatgtttagtgtcgttgaaggc |
248 |
Q |
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| T |
47571040 |
tcatttttctgtattccattctatcaaggaaatggttagaatgtatagtgttgctgaaggc |
47570980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47566760 - 47566714
Alignment:
| Q |
1 |
agaattttatcttttgagctatttctcttgattgttgaaaataagaa |
47 |
Q |
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| T |
47566760 |
agaattttatcttttgagctatttctcttaattaatgaaaagaagaa |
47566714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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