View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17351_low_25 (Length: 271)

Name: NF17351_low_25
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17351_low_25
NF17351_low_25
[»] chr7 (21 HSPs)
chr7 (28-257)||(10492845-10493074)
chr7 (119-255)||(13332085-13332221)
chr7 (119-257)||(8647730-8647868)
chr7 (119-257)||(8668494-8668632)
chr7 (122-257)||(7876772-7876907)
chr7 (125-242)||(8655393-8655510)
chr7 (122-257)||(6790439-6790574)
chr7 (119-257)||(3148400-3148538)
chr7 (188-257)||(8591427-8591496)
chr7 (125-240)||(17269146-17269261)
chr7 (122-257)||(8584474-8584609)
chr7 (122-257)||(8630257-8630392)
chr7 (188-240)||(8602780-8602832)
chr7 (125-240)||(17261438-17261553)
chr7 (125-242)||(8660288-8660405)
chr7 (125-257)||(1302340-1302472)
chr7 (125-241)||(8610709-8610825)
chr7 (122-242)||(27829283-27829403)
chr7 (194-242)||(8546719-8546767)
chr7 (187-242)||(29576992-29577047)
chr7 (191-240)||(8577335-8577384)
[»] chr4 (5 HSPs)
chr4 (119-257)||(9322999-9323137)
chr4 (119-257)||(9334971-9335109)
chr4 (119-257)||(9377478-9377616)
chr4 (200-242)||(23586538-23586580)
chr4 (200-242)||(23595371-23595413)
[»] chr1 (3 HSPs)
chr1 (125-257)||(15596088-15596220)
chr1 (122-257)||(4677478-4677613)
chr1 (122-240)||(34465186-34465304)
[»] chr5 (2 HSPs)
chr5 (122-257)||(28220976-28221111)
chr5 (119-240)||(42554122-42554243)
[»] chr2 (7 HSPs)
chr2 (122-242)||(43626364-43626484)
chr2 (119-257)||(16656535-16656673)
chr2 (125-242)||(7543321-7543438)
chr2 (122-242)||(14705507-14705627)
chr2 (183-242)||(12235842-12235901)
chr2 (122-240)||(16661004-16661122)
chr2 (187-257)||(12257917-12257987)
[»] chr8 (2 HSPs)
chr8 (119-210)||(43745897-43745988)
chr8 (194-240)||(12529914-12529960)
[»] chr6 (1 HSPs)
chr6 (122-231)||(28911360-28911470)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 10492845 - 10493074
Alignment:
Q  28 tattacttacaaaacaaaacaaaaaagttctgtttcttttcgtgtcatggattccatcnnnnnnnnnnnnntcacgacaaaagaatatgaagcagtggga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  10492845 tattacttacaaaacaaaacaaaaaagttctgtttcttttcgtgtcatggattccatcaaaaaaagaaaaatcacgacaaaagaatatgaagcagtggga 10492944  T
Q  128 atagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacacctt 227  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10492945 atagatcttggaacaacctactcatgtgttgctgtatggcttgatgaacaccaaagagttgaaattattcacaatgatcaaggaaatagaactacacctt 10493044  T
Q  228 cttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||||||||||||||||||||||||||    
T  10493045 cttttgttgctttcaacaatgatcaaaggt 10493074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 13332085 - 13332221
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13332085 gcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 13332184  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaag 255  Q
    |||||||||||||||||||||||||||||||||||||    
T  13332185 ctacaccttcttttgttgctttcaacaatgatcaaag 13332221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 8647868 - 8647730
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||    
T  8647868 gcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatgaacacaatagagttgagattattcacaatgatcaaggaaacagaa 8647769  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  8647768 ctacaccttcttttgttgctttcaccgatgatcaaaggt 8647730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 8668632 - 8668494
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  8668632 gcagtgggaatagatcttggaacaacctattcatgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaa 8668533  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
      ||||||||||||||||||||||||||||| |||||||    
T  8668532 taacaccttcttttgttgctttcaacaatgaacaaaggt 8668494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 7876772 - 7876907
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| ||||||||||| || || ||||||||||||||||||||||||||| | ||||| || |||||||||||||| ||||| || ||||| |    
T  7876772 gtgggaatagaccttggaacaacgtattcctgtgttgctgtgtggcttgatgaacacaatagagtcgaaattattcacaatgaacaaggcaacagaacaa 7876871  T
Q  222 caccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    |||||||||||||||||||||  |||||||||||||    
T  7876872 caccttcttttgttgctttcacgaatgatcaaaggt 7876907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 8655510 - 8655393
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| || ||||||||||| || |||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||    
T  8655510 ggaatagacctcggaacaacctattcatgtgttgctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacac 8655411  T
Q  225 cttcttttgttgctttca 242  Q
    ||||| ||||||||||||    
T  8655410 cttctgttgttgctttca 8655393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 6790574 - 6790439
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| || |||||||| || || ||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||| || | ||| |    
T  6790574 gtgggaatagacctgggaacaacatattcttgtgttggtgtgtggcttgatgaacacaatagagttgagattattcacaatgaccaaggtaacaaaacca 6790475  T
Q  222 caccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||||||||||||||||| | |||| |||||||    
T  6790474 caccttcttttgttgctttcaccgatgaccaaaggt 6790439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 3148538 - 3148400
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    ||||||||||| || ||||||||||| || ||||| |||||||| ||||| ||||| ||| | ||||||||||||||||||||||| ||||| || | ||    
T  3148538 gcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggctcgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaa 3148439  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | ||||||||||||||||||||||   ||||||||||||    
T  3148438 ccacaccttcttttgttgctttcactgatgatcaaaggt 3148400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 8591496 - 8591427
Alignment:
Q  188 gagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||||||||||||    
T  8591496 gagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggt 8591427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 17269261 - 17269146
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| ||||| || || ||||| |||||||||||||||| ||| ||||||   |||||||||||||| |||||||||||||| || | |||||| |    
T  17269261 ggaatagaccttgggacgacatactcatgtgttgctgtgtggcatgaagaacacggtagagttgagattatacacaatgatcaaggcaacaaaactactc 17269162  T
Q  225 cttcttttgttgcttt 240  Q
    | ||||||||||||||    
T  17269161 cgtcttttgttgcttt 17269146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 8584474 - 8584609
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| |||||||||||||| || ||||||| ||| ||| | || ||| |  | |||||||||||||||||||| ||| |||| |||| ||  |    
T  8584474 gtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaacgatgaaggcaataaaatca 8584573  T
Q  222 caccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||| ||||||||||| | | ||||||||||||    
T  8584574 caccttcctttgttgcttttaccgatgatcaaaggt 8584609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 8630392 - 8630257
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| |||||||||||||| || ||||||| ||| ||| | || ||| |  | |||||||||||||||||||||||| |||| |||| ||  |    
T  8630392 gtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaatgatgaaggcaataaaatca 8630293  T
Q  222 caccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||| || |||||||| | | ||||||||||||    
T  8630292 caccttccttcgttgcttttaccgatgatcaaaggt 8630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8602832 - 8602780
Alignment:
Q  188 gagattattcacaatgatcaaggaaatagaactacaccttcttttgttgcttt 240  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  8602832 gagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttt 8602780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 17261553 - 17261438
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| ||||| || || ||||| |||||||| || |||| ||| |||||    ||||||||||| |||||||||||||||||||| | || ||| |    
T  17261553 ggaatagaccttgggacgacatactcttgtgttgccgtatggcatgaagaacatggtagagttgagatcattcacaatgatcaaggaaacaaaattactc 17261454  T
Q  225 cttcttttgttgcttt 240  Q
    ||||||||||||||||    
T  17261453 cttcttttgttgcttt 17261438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 8660405 - 8660288
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| |||||||||||||| |||||||||||||||||||| ||  | ||| |  |||| ||||| ||  |||| || |||||||| | ||| ||||    
T  8660405 ggaatagaccttggaacaacctattcgtgtgttgctgtgtggctggagaatcacaatcgagtcgagatcatctacaacgaccaaggaaacaaaacaacac 8660306  T
Q  225 cttcttttgttgctttca 242  Q
    |||| |||||||||||||    
T  8660305 cttcatttgttgctttca 8660288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 1302472 - 1302340
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| |||||||| || || |||||||||||||||||||| ||  | ||| | ||||| ||||| ||  |||| || ||||| || | ||| ||||    
T  1302472 ggaatagaccttggaactacttattcgtgtgttgctgtgtggctggagaatcacaatagagtagagatcatctacaacgaccaaggcaacaaaacaacac 1302373  T
Q  225 cttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | |||||||||||||||| | ||||||||||||    
T  1302372 cgtcttttgttgctttcaccgatgatcaaaggt 1302340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 8610825 - 8610709
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||  ||  || || | |||| |||||| || || ||||| |||||||| ||||| || |    
T  8610825 ggaattgatcttggaacaacctattcatgtgttgctgtatggcaggaacaaaacaacagagctgagataatccataatgagcaaggaaacagaaccactc 8610726  T
Q  225 cttcttttgttgctttc 241  Q
    |||||||||||||||||    
T  8610725 cttcttttgttgctttc 8610709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 27829283 - 27829403
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    |||||||| || || || ||||| |||||||| ||||| | |||||  ||| ||||| | ||||| ||||||||||||||||| ||||| || |  || |    
T  27829283 gtgggaattgacctaggtacaacgtactcgtgcgttgcagcgtggcaggatcaacacaacagagtggagattattcacaatgaacaaggcaacaagacaa 27829382  T
Q  222 caccttcttttgttgctttca 242  Q
    ||||||||| |||||||||||    
T  27829383 caccttcttgtgttgctttca 27829403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 8546767 - 8546719
Alignment:
Q  194 attcacaatgatcaaggaaatagaactacaccttcttttgttgctttca 242  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  8546767 attcacaatgatcaaggaaacaaaacaacaccttcttgtgttgctttca 8546719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 29576992 - 29577047
Alignment:
Q  187 tgagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttca 242  Q
    |||||| || |||||||||||||| |||||||| ||||||||| |||| |||||||    
T  29576992 tgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttca 29577047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 8577384 - 8577335
Alignment:
Q  191 attattcacaatgatcaaggaaatagaactacaccttcttttgttgcttt 240  Q
    ||||| ||||||||||||||||| ||||| || ||||||| |||||||||    
T  8577384 attatacacaatgatcaaggaaacagaaccactccttcttgtgttgcttt 8577335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 9322999 - 9323137
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  9322999 gcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaa 9323098  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | ||||||||||||||||||||||||||||| |||||||    
T  9323099 caacaccttcttttgttgctttcaacaatgagcaaaggt 9323137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 9334971 - 9335109
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  9334971 gcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaa 9335070  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | ||||||||||||||||||||||||||||| |||||||    
T  9335071 caacaccttcttttgttgctttcaacaatgagcaaaggt 9335109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 9377478 - 9377616
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||    
T  9377478 gcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagattattcacaatgatcaaggaaaccgaa 9377577  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | ||||||||||||||||||||||||||||| |||||||    
T  9377578 caacaccttcttttgttgctttcaacaatgagcaaaggt 9377616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 23586538 - 23586580
Alignment:
Q  200 aatgatcaaggaaatagaactacaccttcttttgttgctttca 242  Q
    |||||||| || ||||||||||||||||||| |||||||||||    
T  23586538 aatgatcagggtaatagaactacaccttcttatgttgctttca 23586580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 23595371 - 23595413
Alignment:
Q  200 aatgatcaaggaaatagaactacaccttcttttgttgctttca 242  Q
    |||||||| || ||||||||||||||||||| |||||||||||    
T  23595371 aatgatcagggtaatagaactacaccttcttatgttgctttca 23595413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 15596220 - 15596088
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| ||||||||||| || || ||||||||||||||||||||||||||  | ||||| |||||||| |||||||| |||||||| |||| |||||    
T  15596220 ggaatagaccttggaacaacgtattcttgtgttgctgtgtggcttgatgaacagaatagagtcgagattatccacaatgaccaaggaaacagaattacac 15596121  T
Q  225 cttcttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||||||| ||||||  |||||||||||||    
T  15596120 cttcttttgtttctttcactaatgatcaaaggt 15596088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 4677478 - 4677613
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    |||||||||||||||||||| || || || ||||||||||||||||| ||  | ||| | ||||| ||||||||| ||||||| ||||| || | ||| |    
T  4677478 gtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaa 4677577  T
Q  222 caccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    ||||||||||||||||||| |   ||||||||||||    
T  4677578 caccttcttttgttgcttttactgatgatcaaaggt 4677613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 34465186 - 34465304
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| ||||| ||||||||||| |||||||| || ||||  ||  |||||   ||||| ||||||||| ||||||| ||||| || | ||| |    
T  34465186 gtgggaatagaccttggcacaacctactcatgtgttgcagtatggcaggaacaacacagtagagtagagattattgacaatgaccaaggtaacacaacca 34465285  T
Q  222 caccttcttttgttgcttt 240  Q
    |||||||||||||||||||    
T  34465286 caccttcttttgttgcttt 34465304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 28221111 - 28220976
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||||||||||||||| || || ||||||||||||||||  ||||||||| | || |||||||||||||||||||||||||| || | ||| |    
T  28221111 gtgggaatagatcttggaacaacgtattcatgtgttgctgtgtggcaagatgaacacaatagggttgagattattcacaatgatcaaggcaacaaaacaa 28221012  T
Q  222 caccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | ||||||||||||||||||| | ||||| ||||||    
T  28221011 ctccttcttttgttgctttcaccgatgatgaaaggt 28220976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 42554122 - 42554243
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    |||||||||||||| ||||||||||| || ||||||||| ||||||||   ||||||||  | ||||||||||||||||||||||||||||| || | ||    
T  42554122 gcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgggaagatgaacaaaatagagttgagattattcacaatgatcaaggcaacaaaa 42554221  T
Q  219 ctacaccttcttttgttgcttt 240  Q
    | ||||||||||||||||||||    
T  42554222 caacaccttcttttgttgcttt 42554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 43626484 - 43626364
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| ||||||||||| || || ||| |||||||||||||||||||| ||  |||||| |||||||| |||||||| |||||||| |||||||    
T  43626484 gtgggaatagaccttggaacaacgtattcttgtattgctgtgtggcttgatgaaaacagaagagtagagattatccacaatgaccaaggaaacagaacta 43626385  T
Q  222 caccttcttttgttgctttca 242  Q
    |||||||||||||| ||||||    
T  43626384 caccttcttttgtttctttca 43626364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 16656535 - 16656673
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaa 218  Q
    |||||||||||||| ||||||||||| || || ||||||||||||||| | ||    ||| | ||||  ||||| || |||||||| || ||||| ||||    
T  16656535 gcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatggaccgtcacaacagagcagagatcatacacaatgaccagggaaacagaa 16656634  T
Q  219 ctacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    | ||||||||||||||||||||||   ||||||||||||    
T  16656635 caacaccttcttttgttgctttcactcatgatcaaaggt 16656673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 7543438 - 7543321
Alignment:
Q  125 ggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaactacac 224  Q
    |||||||| ||||| ||||| ||||| |||||||| || ||||  ||| ||||| |  ||||||| || |||||||| || ||||| || ||||| ||||    
T  7543438 ggaatagaccttggcacaacgtactcttgtgttgcagtatggcaggatcaacactatcgagttgaaatcattcacaacgaccaaggcaacagaacaacac 7543339  T
Q  225 cttcttttgttgctttca 242  Q
    ||||||||||||||||||    
T  7543338 cttcttttgttgctttca 7543321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 14705627 - 14705507
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||||||||| ||||| ||||| ||||| |||||||| || ||||  ||  ||||  |  ||||||| || |||||||| |||||||| |||||||| |    
T  14705627 gtgggaatagaccttggtacaacgtactcatgtgttgcagtatggcaggaacaacattatcgagttgaaatcattcacaacgatcaaggcaatagaacaa 14705528  T
Q  222 caccttcttttgttgctttca 242  Q
    | |||||||||||||||||||    
T  14705527 ctccttcttttgttgctttca 14705507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 12235901 - 12235842
Alignment:
Q  183 gagttgagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttca 242  Q
    |||||||||| |||||||| |||||||| |||||||| || |||||||||||||||||||    
T  12235901 gagttgagatcattcacaacgatcaaggcaatagaacaaccccttcttttgttgctttca 12235842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 16661004 - 16661122
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaaggaaatagaacta 221  Q
    ||||| ||||| || |||||||| ||||| ||||||||||| ||| | || ||  |  | |||||||||||||| ||||| ||| |||| || | || ||    
T  16661004 gtgggcatagacctaggaacaacatactcatgtgttgctgtttggttggaagagaaaaacagagttgagattatccacaacgatgaaggcaacaaaatta 16661103  T
Q  222 caccttcttttgttgcttt 240  Q
    |||||||||||||||||||    
T  16661104 caccttcttttgttgcttt 16661122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 12257917 - 12257987
Alignment:
Q  187 tgagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggt 257  Q
    |||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||| |  || ||||||||||    
T  12257917 tgagatcattcacaacgatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggt 12257987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 43745988 - 43745897
Alignment:
Q  119 gcagtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaagg 210  Q
    |||||||||||||| ||||||||||| || |||||||||||||||||||  ||||||||  | |||||||||||||||||||||||||||||    
T  43745988 gcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcaagatgaacaaaatagagttgagattattcacaatgatcaagg 43745897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 12529960 - 12529914
Alignment:
Q  194 attcacaatgatcaaggaaatagaactacaccttcttttgttgcttt 240  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||||    
T  12529960 attcacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttt 12529914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 28911470 - 28911360
Alignment:
Q  122 gtgggaatagatcttggaacaacctactcgtgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaagg-aaatagaact 220  Q
    |||||||| || ||||||| ||| || | | |||||| ||||||||||||||||||| |  ||||| | |||||||||||||||||||| ||  | ||||    
T  28911470 gtgggaattgaccttggaataacgtatttgagtgttggtgtgtggcttgatgaacacaatggagttaatattattcacaatgatcaaggcaacaaaaact 28911371  T
Q  221 acaccttcttt 231  Q
    |||||||||||    
T  28911370 acaccttcttt 28911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University