View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17351_low_32 (Length: 245)

Name: NF17351_low_32
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17351_low_32
NF17351_low_32
[»] chr3 (1 HSPs)
chr3 (55-197)||(48745315-48745457)
[»] chr1 (2 HSPs)
chr1 (55-123)||(8440035-8440103)
chr1 (1-44)||(28927158-28927201)
[»] chr4 (4 HSPs)
chr4 (57-128)||(13137275-13137346)
chr4 (61-123)||(26169066-26169128)
chr4 (55-128)||(42527185-42527258)
chr4 (59-126)||(8815548-8815616)
[»] chr8 (1 HSPs)
chr8 (55-127)||(43776414-43776487)
[»] chr5 (2 HSPs)
chr5 (55-108)||(24561309-24561361)
chr5 (57-108)||(24602344-24602394)
[»] chr2 (1 HSPs)
chr2 (55-97)||(38409216-38409258)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 48745457 - 48745315
Alignment:
Q  55 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaagaaacgaatccggaatatcagcaata 154  Q
    |||| ||||||||||||||||||||| || |||||| | |||||||| ||||| |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  48745457 agagactaaaatgaattatattaccacgataaaaggtcttcctggcataagatatgcgaaggag-aaacaccaagaaacgaatctggagtatcagcaata 48745359  T
Q  155 tttacagaatttacaaggcaacaacctaaa-cccaccaaaaaca 197  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  48745358 tttacagaatttacaaggaaacaacctaaaccccaccaaaaaca 48745315  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 8440035 - 8440103
Alignment:
Q  55 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaac 123  Q
    |||||||||||||||||||||||||| ||||||||  ||||||  ||||| ||||||||||||||||||    
T  8440035 agaggctaaaatgaattatattaccacgacaaaagatcctcctaacacaaaatgtgcgaaggaggaaac 8440103  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28927201 - 28927158
Alignment:
Q  1 tggtttttgcctcctctatttttgattcctttgctctctcattt 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  28927201 tggtttttgcctcctctatttttgtttcctttgctctctcattt 28927158  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 13137346 - 13137275
Alignment:
Q  57 aggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaa 128  Q
    ||||||||||||||||||||||||  |||||||| | |||| |||||||||||||  |||| ||||||||||    
T  13137346 aggctaaaatgaattatattaccacaacaaaaggtcttcctagcacaagatgtgccgaggaagaaacaccaa 13137275  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 26169066 - 26169128
Alignment:
Q  61 taaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaac 123  Q
    |||||| || |||||||||| |||||||| ||||||| ||||||| |||||||||||||||||    
T  26169066 taaaataaaatatattaccacgacaaaagaccctcctagcacaagttgtgcgaaggaggaaac 26169128  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 42527185 - 42527258
Alignment:
Q  55 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatgtgcgaaggaggaaacaccaa 128  Q
    |||||| ||||||||||||||||| |   ||||||||| |||| ||||||| ||||  ||||| ||||||||||    
T  42527185 agaggcaaaaatgaattatattactacatcaaaaggccttcctagcacaaggtgtgtcaaggaagaaacaccaa 42527258  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 8815616 - 8815548
Alignment:
Q  59 gctaaaatgaattatattaccatgacaaa-aggccctcctggcacaagatgtgcgaaggaggaaacacc 126  Q
    ||||||||||| ||||||||||| ||||| ||||| |||| |||||||  |||| ||||| ||||||||    
T  8815616 gctaaaatgaaatatattaccataacaaataggccttcctagcacaaggagtgctaaggaagaaacacc 8815548  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 43776487 - 43776414
Alignment:
Q  55 agaggctaaaatgaattatattaccatgacaaaa-ggccctcctggcacaagatgtgcgaaggaggaaacacca 127  Q
    ||||||||||||||||||||||||||  |||||| |||| |||| ||||||| ||| | ||||| |||||||||    
T  43776487 agaggctaaaatgaattatattaccacaacaaaatggccttcctagcacaaggtgtactaaggaagaaacacca 43776414  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 24561309 - 24561361
Alignment:
Q  55 agaggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatg 108  Q
    ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||    
T  24561309 agaggcttaaatgaattatattaccacgac-aaagaccctcctggcacaagatg 24561361  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 24602344 - 24602394
Alignment:
Q  57 aggctaaaatgaattatattaccatgacaaaaggccctcctggcacaagatg 108  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||||||||||||    
T  24602344 aggcttaaatgaattatattaccacgac-aaagaccctcctggcacaagatg 24602394  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 38409258 - 38409216
Alignment:
Q  55 agaggctaaaatgaattatattaccatgacaaaaggccctcct 97  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  38409258 agaggctaaaatgaattatattaccacaacaaaaggccttcct 38409216  T

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