View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17351_low_33 (Length: 233)
Name: NF17351_low_33
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47696331 - 47696111
Alignment:
| Q |
1 |
gcttgattaaggagaacaatattttaccaagcttcatcaaggagagcaacgattcctccaggtttctgcaaaaggaaaaagcaatgtataagactagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47696331 |
gcttgattaaggagaacaatattttaccaagcttcatcaaggagagcaacgattcctccaggtttctgcaaaaggaaaaagcaatgtataagactagtaa |
47696232 |
T |
|
| Q |
101 |
ggaaagtagaggatgacaaagttacagaaaaggatgaaaaactgattgaattttggcaaaactgtaaaaatgaacaaagttacaacctagggaaagatcg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47696231 |
ggaaagtagaggaggacaaagttacagaaaaggatgaaaaactgattgaattttggcaaaactgtaaaaatgaacaaagttacaacctagggaaagatcg |
47696132 |
T |
|
| Q |
201 |
cttaataacagtagtatctga |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47696131 |
cttaataacagtagtatctga |
47696111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 35827276 - 35827332
Alignment:
| Q |
23 |
tttaccaagcttcatcaaggagagcaacgattcctccaggtttctgcaaaaggaaaa |
79 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||| | |||||| ||||| |||| |
|
|
| T |
35827276 |
tttaccaagcttcgtcgaggagagcaatgattcctccggatttctgaaaaagcaaaa |
35827332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University