View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17351_low_34 (Length: 219)
Name: NF17351_low_34
Description: NF17351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17351_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 35851587 - 35851429
Alignment:
| Q |
46 |
aagcggctttcaagaaataatcgcaaatttcaggcagagataatacctttgaattgaaaaatatagtcgtgagctgatcggatatcttaccttgcaaatt |
145 |
Q |
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| T |
35851587 |
aagcggctttcaagaaattatcgcaaatttcagacagagataatacatttgaattgcataatatagccgtgagctgatcggatatcttaccttgcaaatt |
35851488 |
T |
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| Q |
146 |
gattttcaataca---cttccatatttaacacgctccaatggtaaagctaccatggtct |
201 |
Q |
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| T |
35851487 |
gattttcaatacacttcttccatattgaaaacgctccaatggtaaagctaccatggtct |
35851429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 35803570 - 35803668
Alignment:
| Q |
16 |
gaagataaatggcggaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacctttgaattgaaaaatatagtcg |
114 |
Q |
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| T |
35803570 |
gaagataaatggcggaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacctttgaattgaaaaatatagtcg |
35803668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 10520287 - 10520210
Alignment:
| Q |
16 |
gaagataaatggcggaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
93 |
Q |
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| T |
10520287 |
gaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagataacacct |
10520210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 7973691 - 7973742
Alignment:
| Q |
30 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggca |
81 |
Q |
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| T |
7973691 |
gaaatacgaggatcataagcggctttcaacaaattctcgcaaatttgaggca |
7973742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 47292418 - 47292355
Alignment:
| Q |
30 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
93 |
Q |
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| T |
47292418 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
47292355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 45883474 - 45883532
Alignment:
| Q |
30 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataa |
88 |
Q |
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| T |
45883474 |
gaaatacgaggatcataagctgctttcaacaaattatcgcaaatttggggaagagataa |
45883532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45863512 - 45863571
Alignment:
| Q |
16 |
gaagataaatggcggaaatacgaggatcataagcggctttcaagaaataatcgcaaattt |
75 |
Q |
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| T |
45863512 |
gaagatatacggcagaaatacgaggatcataagctgctttcaacaaattatctcaaattt |
45863571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 56209768 - 56209839
Alignment:
| Q |
16 |
gaagataaatggcggaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagata |
87 |
Q |
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| T |
56209768 |
gaagatatacggcagaaatacgatgatcataagctgctttcaacatattatcgcaaaattgaggcagagata |
56209839 |
T |
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